LOCUS       NM_001373939            3304 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus tetratricopeptide repeat domain 13 (Ttc13), transcript
            variant 4, mRNA.
ACCESSION   NM_001373939 XM_006530965
VERSION     NM_001373939.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC151736.6 and AC135015.3.
            
            On Sep 5, 2019 this sequence version replaced XM_006530965.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13862062.195258.1,
                                           SRR7345562.3390194.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-236               AC151736.6         172090-172325
            237-331             AC151736.6         179779-179873
            332-407             AC151736.6         181370-181445
            408-478             AC151736.6         184089-184159
            479-544             AC151736.6         194341-194406
            545-637             AC151736.6         195976-196068
            638-754             AC151736.6         198310-198426
            755-865             AC151736.6         199122-199232
            866-948             AC135015.3         3179-3261
            949-1090            AC135015.3         4540-4681
            1091-1265           AC135015.3         4833-5007
            1266-1422           AC135015.3         8904-9060
            1423-1553           AC135015.3         9651-9781
            1554-1686           AC135015.3         10223-10355
            1687-1779           AC135015.3         11379-11471
            1780-1863           AC135015.3         13467-13550
            1864-1948           AC135015.3         14452-14536
            1949-2058           AC135015.3         17088-17197
            2059-2194           AC135015.3         18181-18316
            2195-2274           AC135015.3         19097-19176
            2275-2353           AC135015.3         19803-19881
            2354-2433           AC135015.3         20011-20090
            2434-3304           AC135015.3         21341-22211
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 72.81 cM"
     gene            1..3304
                     /gene="Ttc13"
                     /note="tetratricopeptide repeat domain 13"
                     /db_xref="GeneID:234875"
                     /db_xref="MGI:MGI:2384573"
     exon            1..236
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..2548
                     /gene="Ttc13"
                     /note="isoform 4 precursor is encoded by transcript
                     variant 4"
                     /codon_start=1
                     /product="tetratricopeptide repeat protein 13 isoform 4
                     precursor"
                     /protein_id="NP_001360868.1"
                     /db_xref="GeneID:234875"
                     /db_xref="MGI:MGI:2384573"
                     /translation="MAPAGCGCGCSGSLGAAVVRPLLLLLGALACARATEHYSPLSLL
                     KQELQHRQQQEAPAGGGCPQSGDWADQYPECESSFLNFHESDCELRGSAPCDSLLSLN
                     TEKILSQAKSIAEQKRFPFATDNDSTNEELAIAYVLVGSGLYDEAIRHFSTMLQEEPD
                     LVSAIYGRGIAYGKKGLHDIKNAELALFELSRVIALEPDRPEVFEQRAEILSPLGRIN
                     EAVNDLTKAIQLQPSARLYRHRGTLYFISEDYATAHEDFQQSLELNRNQPTAMLYKGL
                     TFFHRGLLKEAIEAFKEALKQKVDFIDAYKSLGQAYRELGNFDAATESFQKALLLNQN
                     HVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKGLSHVAMGQFYEGIKA
                     QTKVMLNDPLPGQKASPEYLRVKYLREYSRYLHAHLDTPLTEYNIDSDLPGSFKDHWA
                     KNLPFLIDGYEEQPGLQPHIRDVLHQNFEGYKPEVQELICVADRLGSLMQYETPGFLP
                     NKRIHRAMGLAALEVMQAVHRTWTNSKVRMNGKTRLLQWRDMFDIAVKWRRIADPDQP
                     VLWLDQMPAPSLSRGFNNHINLIRGQVINMRYLEYFEKILHFIKDRILVYHGANNPKG
                     LLEVREALEKVHKVEDLLPIMKQFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGD
                     KVGNILFSVETQTTEERTQLYHAEIDALYKDLTAKGKVLTLSAEFGEADAVCNLILSL
                     VYYFYNLMPLSRGSSVIAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSK
                     IAKSWMNLKSISPSYKTLPSVSETFPTLRSMIEVLNTDSTPRCLKKL"
     exon            237..331
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            332..407
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            408..478
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            479..544
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            545..637
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            638..754
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            755..865
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            866..948
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1090
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1265
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1266..1422
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1423..1553
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1686
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1687..1779
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1780..1863
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1864..1948
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            1949..2058
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2059..2194
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2195..2274
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2275..2353
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2354..2433
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
     exon            2434..3304
                     /gene="Ttc13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgcgggaag atggcacctg ccggctgcgg ctgcggctgc tcgggcagct tgggtgctgc
       61 ggtggtgcgg ccgctgctcc tgctgctggg ggcgctggcc tgcgcgcggg ccaccgagca
      121 ctactctccg ctgtccttgc tgaagcagga gcttcagcac cggcagcagc aggaggcccc
      181 ggcgggcggc ggctgtccgc agtcggggga ctgggcggac cagtacccgg agtgcgagtc
      241 gtcatttttg aacttccacg agtctgactg cgaactgaga ggctcagcac cctgtgactc
      301 gctgctctct ctcaacactg aaaagatttt gagccaggcc aagtctattg cagagcagaa
      361 gagattccca tttgctaccg acaatgacag caccaatgaa gaattagcga ttgcttatgt
      421 cctggtgggc agcggtctct acgatgaagc cataagacac ttttccacga tgctccagga
      481 ggagcctgat ctggttagtg caatttatgg ccgagggata gcctatggaa agaagggact
      541 acatgacatt aagaacgctg agcttgcttt gtttgaactg agccgagtaa ttgccttgga
      601 acctgaccgt ccagaggtat ttgagcagcg agctgaaatt ctgtcccctc tgggacgaat
      661 taacgaagcc gtaaatgatc tcactaaagc tattcagctt cagccctcgg cacggctgta
      721 ccgacaccgg gggaccttgt acttcatatc tgaggactac gcgacagccc acgaggactt
      781 tcagcagtcc ttggagctga acagaaacca gcccacagcc atgctgtaca aaggcctaac
      841 tttctttcac agaggacttc tgaaggaagc catcgaggcc ttcaaagaag ctctgaaaca
      901 gaaagttgac tttatcgatg catataaaag tctgggacag gcctacagag aactgggcaa
      961 ctttgacgca gccaccgaga gcttccagaa ggccctgctg ctcaaccaga accacgtgca
     1021 gaccctgcag ctgcggggaa tgatgctcta ccaccacgga agcctgcagg aggccctgaa
     1081 gaacttcaag cgctgcctgc aactggaacc gtacaacgaa gtgtgccagt acatgaaggg
     1141 gctgagccat gtggccatgg ggcagtttta cgaagggatt aaagcacaaa ccaaagttat
     1201 gctgaatgac cctcttccag gccagaaggc cagcccagag tacctgaggg tcaagtacct
     1261 acgagagtat tctcgatatc tgcacgcaca cctcgatacc cctctgacgg aatataacat
     1321 tgactcggat ctaccgggca gcttcaagga ccactgggcc aagaacctgc ctttcctcat
     1381 agacggctat gaagagcagc ccggcctgca gcctcacatt agagatgtgt tacatcagaa
     1441 tttcgagggc tacaagcctg aagtccagga gctgatctgt gtagctgacc gcctgggctc
     1501 gctgatgcag tatgaaacac cggggttcct gcccaacaag aggatacaca gagccatggg
     1561 cctggcagca ctggaagtca tgcaggccgt acatcgtacc tggaccaact caaaggttcg
     1621 catgaatgga aaaacaaggc tgctgcagtg gagggacatg ttcgacattg ctgtgaagtg
     1681 gagaaggatc gctgatccgg accagcctgt cctgtggctg gatcagatgc cagctccaag
     1741 tctcagcaga gggttcaata accacatcaa cttaatcagg ggtcaagtga tcaatatgag
     1801 atatctggaa tattttgaga aaatacttca ttttattaaa gatagaattc ttgtttatca
     1861 cggagcaaat aatccaaagg gcttattgga agtcagagaa gctctggaaa aggtacacaa
     1921 agtggaagac ctccttccaa ttatgaagca gtttaatacc aaaacaaagg acgggttcac
     1981 cgtgaacacc aaagtcccca gcctcaaaga tcaagggaag gaatatgacg gcttcaccat
     2041 caccatcaca ggagacaagg tcggcaatat cctattttct gtggaaactc aaaccacaga
     2101 agagaggaca cagctgtatc acgctgaaat agatgcactt tataaagacc tgacagcgaa
     2161 gggcaaagta ctgaccctct cggcagaatt cggggaggct gatgctgtct gcaacttaat
     2221 cttatcctta gtgtattact tttataattt aatgcccctg tctcgaggat ctagtgtcat
     2281 tgcgtattca gtcattgtgg gagcgctgat ggccagtggc aaagaagtgg ctgggaagat
     2341 ccccaaaggg aagttagtcg actttgaagc catgacagcc cctggctcag aggccttcag
     2401 caaaatagca aaaagctgga tgaacttgaa gagtatttcc ccttcctaca agaccctgcc
     2461 atcagtatca gagacgttcc cgactctgag gtccatgatc gaggtgctca acacggattc
     2521 caccccacgg tgtctaaaga aactctagcc agatcagagg atttatacac atgaagggcc
     2581 aggcctctca cttcttaagt tattttttaa gacatggaat tattatggaa ttaggtcctt
     2641 tattactttt gataccaatt tttgatagga attgaatact tgaaaacatt ttctttactt
     2701 tttctgaacc gtaagagaaa tcatgaaaac gggttttttg gggaaaagct acttgaccag
     2761 gaagggaagt atgcgtatta gtggcagcct gttggttccc atgtgttaag gtatactgct
     2821 ccttccttac agcaaaaaaa tgtttacttc agaaaccaaa aattaataat taagatgaag
     2881 aaagccaaca accaacaggg cttgtcttca ctgtcagagg tgtgggtgtt cctcagacct
     2941 ccttcctgtg cacctctgtg gggtgcctcg ctactgccat gcccccacat gtgggccctc
     3001 cagcccccct agaactgtgg aagggcccca gcacccacgg ttccatggct tgtgacaaga
     3061 agcactggcc agatgacaga cagtatttgc caatcactga accatatttt tcttttcttt
     3121 gttggaaaaa ataagccgag gtgatttctg aaagtcgcca tgttcaggca ctggattacg
     3181 ttgtgtttgt gtgcgagcta gttttgcttt caggtgtaag agcgtttaga acgtttcttg
     3241 tttcctcaga cagggtggaa gatggaggaa taaggtccat taaaggctgc agtttcaaac
     3301 cgtg
//
