LOCUS       NM_025359               1923 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus tetraspanin 13 (Tspan13), mRNA.
ACCESSION   NM_025359
VERSION     NM_025359.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1923)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1923)
  AUTHORS   Mallmann,R.T., Wilmes,T., Lichvarova,L., Buhrer,A., Lohmuller,B.,
            Castonguay,J., Lacinova,L. and Klugbauer,N.
  TITLE     Tetraspanin-13 modulates voltage-gated CaV2.2 Ca2+ channels
  JOURNAL   Sci Rep 3, 1777 (2013)
   PUBMED   23648579
REFERENCE   3  (bases 1 to 1923)
  AUTHORS   Garcia-Espana,A., Chung,P.J., Sarkar,I.N., Stiner,E., Sun,T.T. and
            Desalle,R.
  TITLE     Appearance of new tetraspanin genes during vertebrate evolution
  JOURNAL   Genomics 91 (4), 326-334 (2008)
   PUBMED   18291621
REFERENCE   4  (bases 1 to 1923)
  AUTHORS   Tachikawa,K., Sasaki,S., Maeda,T. and Nakajima,K.
  TITLE     Identification of molecules preferentially expressed beneath the
            marginal zone in the developing cerebral cortex
  JOURNAL   Neurosci Res 60 (2), 135-146 (2008)
   PUBMED   18055048
REFERENCE   5  (bases 1 to 1923)
  AUTHORS   Iwai,K., Ishii,M., Ohshima,S., Miyatake,K. and Saeki,Y.
  TITLE     Expression and function of transmembrane-4 superfamily
            (tetraspanin) proteins in osteoclasts: reciprocal roles of Tspan-5
            and NET-6 during osteoclastogenesis
  JOURNAL   Allergol Int 56 (4), 457-463 (2007)
   PUBMED   17965585
  REMARK    GeneRIF: Down-regulated in pre-osteoclasts during cell
            differentiation.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CT030196.9.
            
            On Nov 17, 2006 this sequence version replaced NM_025359.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC018317.1, AK167495.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-228               CT030196.9         62041-62268
            229-396             CT030196.9         80447-80614
            397-477             CT030196.9         81686-81766
            478-591             CT030196.9         82605-82718
            592-705             CT030196.9         83916-84029
            706-1923            CT030196.9         88747-89964
FEATURES             Location/Qualifiers
     source          1..1923
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 16.25 cM"
     gene            1..1923
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /note="tetraspanin 13"
                     /db_xref="GeneID:66109"
                     /db_xref="MGI:MGI:1913359"
     exon            1..228
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /inference="alignment:Splign:2.1.0"
     exon            229..396
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /inference="alignment:Splign:2.1.0"
     exon            397..477
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /inference="alignment:Splign:2.1.0"
     exon            478..591
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /inference="alignment:Splign:2.1.0"
     exon            592..705
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /inference="alignment:Splign:2.1.0"
     exon            706..1923
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      904..909
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /note="hexamer: ATTAAA"
     polyA_site      923
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /note="major polyA site"
     regulatory      1897..1902
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
                     /note="hexamer: AATAAA"
     polyA_site      1923
                     /gene="Tspan13"
                     /gene_synonym="1100001I23Rik; NET-6; Tm4sf13"
ORIGIN      
        1 gggagccgct gcgggcgcgg cactgcagcc ctgatcctga accccgaacc cgagccccga
       61 gcctagcccg ggccacaggc tcaggaggcc aggatccaga agctactcgc ccagcccggc
      121 ggaagacgcc tcgacccgca ggcacccgct agcccacgcg ccacgatggt gtgcgggggc
      181 ttctcgtgct ccaagaactg cctgtgcgcg ctcaacctgc tgtataccct ggtcagcctg
      241 ctgctcattg ggattgctgc ctggggcatc ggctttgggc tgatctccag tctccgagtg
      301 gtgggtgtgg tcattgctgt gggcatcttc ctgttcctga ttgccttggt ggggctaatt
      361 ggagctgtaa aacaccacca ggtgttgcta tttttttata tgatcattct cctacttgta
      421 tttattgtcc agttttcagt atcttgtgct tgtttagctc tgaatcggga gcagcagggt
      481 cagctgctgg aagtcggatg gaacaatact gcaagtgctc gaaatgacat ccagaggaat
      541 ttgaactgct gtggcttccg gagctataac ccaaatgaca cctgtccagc tagctgtgct
      601 aaaagtaccc agaagtgctc ctcgtgcgcc cccataatcg gagagtatgc tggagaggtt
      661 ttgaggtttg ttggtggcat tggtctcttc ttcagtttta cagagatcct gggtgtttgg
      721 ctgacctaca gataccggaa ccagaaagac cctcgcgcca acccgagtgc tttcctttga
      781 cgagaagaca aagaagacct ttcctctgtt gatcttgttt tctttctcta atctcaaatt
      841 aaactaattt gttcatacga caaaggaagc agtatctgaa aaccacatta tgtcaacgat
      901 ggaattaaaa attttactct taagtttctc cagacatttt ttttttcttt ccattgctaa
      961 aaaagcaatc gaagttcccc atattccctg gccctcagtg gtccctgtaa tctactgttg
     1021 ttggtgtctg gcactgtcca ccgtggcctt tcttagcatt tttacctgct gtaaactgtg
     1081 tatggcaccc ctgggtagat gatatttgac cccagatctt catctcactg tctaattacc
     1141 cagagcactg gggctcccac ccaagacagt tgatgtttta tgaatccaga aaggaagaga
     1201 ctctgttgtg ttcagttcat taggagaaat ctatgttcct gatacttttt gccttttgga
     1261 aaagctacat tgtagtgaaa agtgttagca cagaagtgat aatttagttc tagtagtctg
     1321 tcaggattgc atccctgtgt tctagaaata gctgtgtctt taggaaaatg aaatttagtt
     1381 tttgaccttt ttagtcaagg gcaaaggaag ataccatttg ggaaatgctt tggtgtgtaa
     1441 catcttcagc tctcaaaatg ggatgaattt gaggaagata gagcatatat ctacataatc
     1501 tgatgtaaaa aaaaaaaata cgaagttcaa aacactgtat atgtaaacaa cttgccgtca
     1561 atacattggc ccaggcccat gtaacaaata gatatttggt tatctttaaa aagtaacttt
     1621 ttttttcaag acagggtttc tttgtgtagc cttggttgtc ctagaactag ctctgtggac
     1681 caggctggcc ttgaactcac agggatccgc ctgcctctgc ctcccaattg ctgggattaa
     1741 aggcacgtgc caccatcgcc tgtcaaaaaa taacttttta atgacatttc ttggtattgt
     1801 gacagcaagt tgtcaaatct aaatatattt gaatgtacta cctcccataa gttgagagag
     1861 aaatggtgtt tgtggctctg tatattacat taaaaaaata aaagctgaaa accttccttt
     1921 gta
//
