LOCUS       NM_133681               1971 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus tetraspanin 1 (Tspan1), mRNA.
ACCESSION   NM_133681 XM_983770
VERSION     NM_133681.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Garcia-Espana,A., Chung,P.J., Sarkar,I.N., Stiner,E., Sun,T.T. and
            Desalle,R.
  TITLE     Appearance of new tetraspanin genes during vertebrate evolution
  JOURNAL   Genomics 91 (4), 326-334 (2008)
   PUBMED   18291621
REFERENCE   2  (bases 1 to 1971)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL670603.6 and
            AL611947.11.
            
            On May 1, 2007 this sequence version replaced NM_133681.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078869.1, AK162521.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-133               AL670603.6         7101-7233           c
            134-198             AL670603.6         6643-6707           c
            199-405             AL611947.11        64375-64581         c
            406-480             AL611947.11        64123-64197         c
            481-579             AL611947.11        63918-64016         c
            580-732             AL611947.11        63684-63836         c
            733-816             AL611947.11        63363-63446         c
            817-1971            AL611947.11        61937-63091         c
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 53.1 cM"
     gene            1..1971
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /note="tetraspanin 1"
                     /db_xref="GeneID:66805"
                     /db_xref="MGI:MGI:1914055"
     exon            1..133
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            134..198
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..864
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /note="tetraspan 1; tspan-1"
                     /codon_start=1
                     /product="tetraspanin-1"
                     /protein_id="NP_598442.1"
                     /db_xref="CCDS:CCDS18508.1"
                     /db_xref="GeneID:66805"
                     /db_xref="MGI:MGI:1914055"
                     /translation="MQCFKFIKVMMFLFNLLIFLCGAALLAVGIWVSVDGTSFLKVFG
                     SLSSSAMQFVNVGYFLIAAGAVLFILGFLGCYGAHSENKCVLMMFFSILLIIFIAEIA
                     GAVVALVYTTLAEQFLTLLVVPAIEKDYGYQTDFTQVWNTTMEELHCCGFNNYTDFNA
                     SRFVKENKVFPPPCCANPGNHTVEPCTEEKAKSMKVQGCFKEILHRIRANAVTVGGVA
                     VGVAALELAAMVVSMYLYCNLK"
     exon            199..405
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            406..480
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            481..579
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            580..732
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            733..816
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            817..1971
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1223..1228
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /note="hexamer: TATAAA"
     regulatory      1231..1236
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /note="hexamer: AATGAA"
     polyA_site      1240
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
     polyA_site      1257
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /note="major polyA site"
     regulatory      1946..1951
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1965
                     /gene="Tspan1"
                     /gene_synonym="9030418M05Rik"
ORIGIN      
        1 agtgttttgc gaggactagc cgctccttca gcgttctgcc agcacactga gtggcagttt
       61 cctggagctg ttctgttcct tctggagtgc aacagatccc gttcagaacc tattgccaag
      121 agccctgaag caggacacac catgcagtgc ttcaaattca ttaaggtcat gatgttcctc
      181 ttcaatctac tcatctttct ctgtggtgca gccctgttgg ctgtgggaat ctgggtgtcc
      241 gtcgatggga catctttcct gaaggtcttc ggatcactat catccagtgc catgcagttt
      301 gtcaacgtgg gctacttcct catcgccgct ggtgctgtgc tcttcattct tggtttcctg
      361 ggctgctatg gtgctcactc tgagaacaag tgtgtgctca tgatgttctt ttccatcctc
      421 ctcatcatct tcatcgctga gattgcaggt gctgtggttg ctttggtgta caccacattg
      481 gctgaacaat tcctgacact cctggtggtg cctgctatcg aaaaagacta tggttaccag
      541 actgatttca cccaagtatg gaacactaca atggaagagt tgcattgctg tggctttaac
      601 aactacacag attttaatgc ctcacgtttc gtcaaagaga ataaagtctt ccccccaccc
      661 tgttgtgcca accctggcaa ccatacagtt gaaccatgca ccgaggagaa ggccaaaagt
      721 atgaaagtac agggttgttt caaagagatt ctgcatagaa tcagagccaa tgcagtcact
      781 gtgggtggtg tggcagttgg agttgcggcc ctagagctgg ctgccatggt tgtatccatg
      841 tatctatact gcaatctgaa ataagactac tacttcctcc tgacttgctg ccgtcacatg
      901 gaaaccagga agaggcactt ggcacagcta agcagcagca atgggtggag atgaaatgtc
      961 atttgggctg gaatggattt gcctttgctg ctcagggact ttgggctaaa tagggaccac
     1021 ctcgtgggct ttgtctgcct tgttcttcca ctggtggggt gaggggggca tcggtcccag
     1081 tctcagaggc agccaagtct gcccatttcc tgagactctt gatgatccta gcactccact
     1141 agtggatgaa ggcacttaca gcctgggcat tttctaacac tgtaaagtca ttgaaggaat
     1201 gtatagaagg cattttggaa cctataaacc aatgaaaata tttctaattg acctgtatat
     1261 gcttggagag atgggtcctg attgcctaag ttgcactgac ttctgtgaag ctggagactc
     1321 agcagggtgg gagggaaggg acgtaggtat ctggttccag cctgggaggg agagtaaaag
     1381 tgtccaagag tacactgagg aagggagagc tgcattggtc tgcgtttatg taccaggagg
     1441 gctttgcggt gaaagttctc cctcctggtg aagggcacta gactggaaag ctatgaaaat
     1501 aacaagcttg tgccaagtca gggctgtgtg ggtggagtca ctagttggag ccctccagga
     1561 acttagataa gtacgtctaa gctatatgcc ctactttggg gaatctcaaa atcatttatt
     1621 cttggcctat ccattgctct aaagatctgt atactttggg gggtgtatat attttattgg
     1681 ggggcagcaa agggggacac aagttcttca gcaattccag acttgtgccc taagggcaga
     1741 tggacacatc gggtatgttt ccatcatctt catcaggaac tgggcagctg aagagtgtgg
     1801 cctgcttgat cttggtggca cagttaatgc aggggctgag agcataatta tagcactatg
     1861 gccaccgttg gcactggctc tttcacccaa gcattctttt tcctttgttt ctgaaaaagg
     1921 ggtcctctac ctcctgaatg ctgggattaa agctgtgcac cattacacct g
//
