LOCUS       NM_054073               1141 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus testis specific gene A13 (Tsga13), mRNA.
ACCESSION   NM_054073
VERSION     NM_054073.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1141)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1141)
  AUTHORS   Miyata,H., Castaneda,J.M., Fujihara,Y., Yu,Z., Archambeault,D.R.,
            Isotani,A., Kiyozumi,D., Kriseman,M.L., Mashiko,D., Matsumura,T.,
            Matzuk,R.M., Mori,M., Noda,T., Oji,A., Okabe,M.,
            Prunskaite-Hyyrylainen,R., Ramirez-Solis,R., Satouh,Y., Zhang,Q.,
            Ikawa,M. and Matzuk,M.M.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
REFERENCE   3  (bases 1 to 1141)
  AUTHORS   Jeong,S., Lee,Y.J., Jang,J.S., Park,C.W., Chung,J.H., Seong,J.K.,
            Lee,K.K. and Yu,D.Y.
  TITLE     A novel epigenetic control operating on Vme1+ locus leads to
            variegated monoallelic expression
  JOURNAL   Biochem Biophys Res Commun 279 (3), 884-890 (2000)
   PUBMED   11162444
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK006265.1.
            
            On Apr 5, 2007 this sequence version replaced NM_054073.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006265.1, AF294348.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849381 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1141              AK006265.1         2-1142
FEATURES             Location/Qualifiers
     source          1..1141
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 12.54 cM"
     gene            1..1141
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /note="testis specific gene A13"
                     /db_xref="GeneID:116732"
                     /db_xref="MGI:MGI:1891413"
     exon            1..76
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
     exon            77..249
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
     CDS             227..1048
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /note="variegated monoallelic expression 1"
                     /codon_start=1
                     /product="testis-specific gene 13 protein"
                     /protein_id="NP_473414.1"
                     /db_xref="CCDS:CCDS19980.1"
                     /db_xref="GeneID:116732"
                     /db_xref="MGI:MGI:1891413"
                     /translation="MGPKKNSKFQEVSGSKPVGNVSIRFEKQLGQDDEEMYDTTAQSK
                     FVLKNLRHYTVHPNMAKYYEPLKPTKLQRFLTQKKKMNSFMLKVTEYDQDMTLLLMTN
                     NPPPCSISQEKDGAPIYFPPEFQLKETLHRCKPNKNDFFPTMSQKKKLKPELKPVFPM
                     KRLDDPTFKGQQWFRFSTDNDFNIEGKYSEIYALRKQKKMYPNLIFAPASQRETKKHV
                     SMKSESETPTSQVFWEPLTFSKLLEEKPTRSVPGESFFRHGRAQQWIVKDAAVIW"
     exon            250..331
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
     exon            332..403
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
     exon            404..607
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
     exon            608..750
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
     exon            751..878
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
     exon            879..1141
                     /gene="Tsga13"
                     /gene_synonym="1700023D02Rik; Vme1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gactcattgt cttcagcacg gaaagcttcc ctgttaagga cttgtctctt cctgagattt
       61 cctagtatcc ttaaaggatc aagattgagt ctgggcacac ggtgtgtgct aagaagagaa
      121 taatttattg acttttgaag cctcatagat ggtgaatcat agaggcactg gttttaggcc
      181 ttgatgaata ctagctgtga gttggtccag ttctcagtga atagccatgg gcccaaagaa
      241 aaattccaag tttcaagaag tcagtggatc aaagcctgtg ggaaatgtct ctattaggtt
      301 tgagaaacaa ctaggtcaag atgatgaaga gatgtatgat acaactgcac aatcgaaatt
      361 tgtcctgaag aacctcagac actacacagt gcatccaaac atggccaaat actatgagcc
      421 tttgaagccc actaaactgc agagattcct gactcaaaag aagaaaatga atagtttcat
      481 gttaaaggtg acagaatatg atcaggatat gacgttactg ctcatgacta acaacccacc
      541 gccctgctcc atcagtcagg aaaaggatgg tgctccaata tacttccccc cggagtttca
      601 gttaaaggaa actctccatc ggtgcaaacc caacaagaat gacttctttc ccacaatgtc
      661 tcagaaaaag aagttaaaac cagagctgaa gccagtcttc cctatgaaac ggctagatga
      721 tcctaccttc aagggacaac aatggtttag gttttctacc gacaatgatt tcaacatcga
      781 agggaagtat tctgaaatct atgctttaag gaaacagaaa aaaatgtatc ctaacctcat
      841 ctttgctcca gcctcccaga gagagacaaa gaaacatgtt tccatgaagt cagagagtga
      901 aacaccaact tcgcaagtat tttgggaacc cctgacattt tcaaagctcc tagaagagaa
      961 gcctacaaga agtgtgccag gggagagctt ctttcgccat ggaagggccc agcagtggat
     1021 tgtcaaagat gcggctgtca tttggtgaag acaaagactt aaagccccac tcctcactct
     1081 ccaagaactg agggggcctg gagaagtcac taaccaaata aagttccctg tttgttgtct
     1141 c
//
