LOCUS       XM_036157059            1961 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus tRNA splicing endonuclease subunit 54
            (Tsen54), transcript variant X4, mRNA.
ACCESSION   XM_036157059
VERSION     XM_036157059.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1961
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..1961
                     /gene="Tsen54"
                     /gene_synonym="0610034P02Rik"
                     /note="tRNA splicing endonuclease subunit 54; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 19 ESTs, 156 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 42 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:76265"
                     /db_xref="MGI:MGI:1923515"
     CDS             73..1605
                     /gene="Tsen54"
                     /gene_synonym="0610034P02Rik"
                     /codon_start=1
                     /product="tRNA-splicing endonuclease subunit Sen54 isoform
                     X3"
                     /protein_id="XP_036012952.1"
                     /db_xref="GeneID:76265"
                     /db_xref="MGI:MGI:1923515"
                     /translation="MPGWAGLRGARAAADSGPMEPEPEPGSVEVPAGRVLSASELRAA
                     RSRSQKLPQRSHGPKDFLPDGSEAQAERLRLCRQELWQLLAEERVERLGSLVAAEWKP
                     EEGFVELTSPAGKFWQTMGYSEEGRQRLHPEEALYLLECGSIQLFYQDLPLSIQEAYQ
                     LLLTEDTLSFLQYQVFSHLKRLGYVVRRFQLRSVNKKPKVLQNSLPPVSLAASSSPAC
                     DQSSQYPEEKSQDSSPRQGSELPLQFLGSSEPCSDLAREDVGCDRESHKIENGAKGTP
                     KLRWNFEQISFPNMASDSRHTFLPAPAPELLPANVIGRGTDAESWCQKLNQRREKLSR
                     RDREQQAVVQQFREDVNADPEVRGCSSWQEYKELLQRRQTQKSQPRPPHLWGQSVTPL
                     LDPDKADCPAAVLQHISVLQTTHLADGGYRLLEKSGGLQISFDVYQADAVATFRKNSP
                     GKPYVRMCISGFDDPVPDLCSLKCLTYQSGDVPLIFALVDHGDISFYSFRDFTLPRDL
                     GH"
ORIGIN      
        1 aaggcgcgag gctcgagggt ggctttatga tcccgaggag cgagcgggtc gaaggcgcta
       61 ggaccgcgcg gaatgccggg gtgggcgggg cttcgcggtg cgcgcgcagc cgcagacagc
      121 ggcccgatgg agcccgaacc cgaacccggg tcggtggagg ttcccgcggg gcgtgtgctc
      181 agcgcctcgg agctccgcgc cgcgcgctcg cggtcccaga agctaccaca gcggtcgcat
      241 ggccccaagg acttcctccc ggacggctcg gaggcccagg cggagcggct gcgcctgtgt
      301 cgccaagagc tgtggcagct gctggcggag gagcgcgtgg agcgcctggg cagcttggtg
      361 gccgcggagt ggaaaccaga agagggcttt gtggagttga cgtctcctgc ggggaaattc
      421 tggcagacca tgggctactc agaggaagga cggcagcgac ttcaccccga agaggctttg
      481 tatctgctgg agtgtggttc gattcagctc ttctaccaag acctcccact gtctatccaa
      541 gaggcatacc agctgctgct gacagaggac accttgagtt tcctgcagta ccaggtcttc
      601 agccacctga agagactggg ctatgtggtt cgtcggttcc agctaaggtc tgttaataag
      661 aagcccaagg tcctgcagaa ctccctgccg cccgtcagcc tggcagcctc cagctcacct
      721 gcctgtgacc agagtagcca atacccagag gagaagtctc aggactcaag ccccaggcag
      781 ggctcagagc tccccttgca gttcctgggg tcctcagagc cttgctctga tctggccagg
      841 gaagacgtgg ggtgtgaccg agagagtcac aaaatagaga atggagctaa gggaacccct
      901 aagctacgct ggaactttga gcagatctca ttccccaaca tggcctctga tagtcgccac
      961 actttcctgc ctgctccagc cccagagctg ctcccagcca atgtcattgg gcgagggaca
     1021 gatgctgagt cctggtgcca aaagctgaac cagcggaggg agaagctctc ccgtagagac
     1081 cgggaacagc aagcagtggt ccagcagttc cgggaggatg ttaacgcaga tcccgaggtg
     1141 cggggctgct ccagctggca ggagtacaag gagctgctgc agaggcgaca gacgcagaag
     1201 agccagcccc ggcctccaca cctatggggc cagtccgtta cccccttgct cgaccctgat
     1261 aaagccgatt gtccagccgc ggtcctgcaa catatctctg tactgcagac gacacacctt
     1321 gctgatggag gttaccggct gctggagaag tctggaggct tgcagatcag cttcgatgtt
     1381 taccaggctg acgctgtggc gacgttccga aaaaacagcc ctggcaaacc ctatgtgcga
     1441 atgtgcatta gtgggtttga tgaccctgtc ccagacctct gcagcctcaa gtgcttgacc
     1501 taccagagtg gggatgttcc cctgatcttt gctctagtgg accacggtga catctccttc
     1561 tacagcttca gagacttcac actgcccagg gatctgggcc actgaataca gctctgggga
     1621 tggcttgctc tgggggggcc tggactgctc tcaggggccg tgccagctgt ctctcatata
     1681 ggactcacct ggatggaacc gtccaggcca ttggggtctg tgatcctagg tgtcttctgt
     1741 ttgtagggac gtgcacaccc tcttgcctgg ccactgtgct ttcaagccca ctgcctggaa
     1801 gtgctgcctg acagtgacgc ccccaccccc accccccttg gaactcagga cttgttttca
     1861 gaggcccagg acttgggtta ggagaaagga ctgtgccttt attcaagggg gtgcttgctt
     1921 cgtgccataa agccaaagcc attaaaaaaa tatatatttt c
//
