LOCUS       NM_025677               1147 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus tRNA splicing endonuclease subunit 15 (Tsen15), mRNA.
ACCESSION   NM_025677
VERSION     NM_025677.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK017650.1, BY065176.1 and AW045476.1.
            
            On Apr 29, 2009 this sequence version replaced NM_025677.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC024342.1, AK017650.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               AK017650.1         2-112
            112-411             BY065176.1         64-363
            412-1129            AK017650.1         413-1130
            1130-1147           AW045476.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 64.75 cM"
     gene            1..1147
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /note="tRNA splicing endonuclease subunit 15"
                     /db_xref="GeneID:66637"
                     /db_xref="MGI:MGI:1913887"
     exon            1..224
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /inference="alignment:Splign:2.1.0"
     exon            225..306
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /inference="alignment:Splign:2.1.0"
     exon            307..442
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /inference="alignment:Splign:2.1.0"
     exon            443..584
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /inference="alignment:Splign:2.1.0"
     exon            585..1133
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1100..1105
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /note="hexamer: AATAAA"
     regulatory      1115..1120
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /note="hexamer: AATAAA"
     polyA_site      1123
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /note="major polyA site"
     polyA_site      1133
                     /gene="Tsen15"
                     /gene_synonym="5730449L18Rik; Sen15"
                     /note="major polyA site"
ORIGIN      
        1 ccagtgtgcg cggcgggaag cggaactccc gcgcgctgga ccgtctgctt ctggccgagc
       61 ggggtttgcg gtgcaccacg gctttctgcg cgggcggcat ggaggagcgc agcgattcca
      121 aacctacccc gggatgtagc gggcctggcc cggctcccgt tcgcgatggc ggcggcgccc
      181 acacatgggc tccggaggac gcctggatgg gcacacaccc taagtattta gaaatgatgg
      241 aattagatat aggagatgcc acccaagttt atatagcatt cttggtttac ctggatctca
      301 tggagagtaa aagttggcat gaagtaaact gtgtaggaat accagaacta caactcatct
      361 gcctccttgg cactgagatc gaaggggaag ggctgcagac ggtggtgcct acacccattt
      421 ctgcttccct cagccataat aggataaggg aaatcttgaa ggcgtctaga aagttgcaag
      481 gcgatccaga actgccgatg tcttttactt tggccatagt ggagtcagat tccacaatag
      541 tctattataa acttaccgat ggatttatgc tgccagaccc tcagaatatt tctcttagaa
      601 gatgacatct gcccttcttg gtgctgactt cagttctgaa agattggatg tgaggctcct
      661 cagcgagctg ctcgtctttt atctcagagg tagtcagggc tgacttagct agtcccaacc
      721 cataaacttc ctttcagaat aaagccttct ccgatggaag cactatattg cttgcaaata
      781 tagttagcct agaactttct tatcagagac agtacagttg catgcgggtt tacaccaagg
      841 atacgtgcag agttgtggag cctggcagtg cctctgccat cccacgtagt cgatagacag
      901 gtatcagtga gtggtacgga gaaaacgcta cagcaagaaa acggacacaa gagcattaac
      961 gtggtcatgg gtgtgaatga cacgccaggc tatgaaagtg acaatcagat tactgatagt
     1021 ggtctcagta ggatggcagg cagcaagtgg atgcctttgt ccttctccac atttcatttg
     1081 tcatttgtat tacttttata ataaaacggt ttaaaataaa aaatatcttg aaaaaaaaaa
     1141 aaaaaaa
//
