LOCUS       NM_001356535            2938 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transformation related protein 53 inducible protein 11
            (Trp53i11), transcript variant 1, mRNA.
ACCESSION   NM_001356535 XM_006499680
VERSION     NM_001356535.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2938)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2938)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2938)
  AUTHORS   Sabbagh,M.F., Heng,J.S., Luo,C., Castanon,R.G., Nery,J.R.,
            Rattner,A., Goff,L.A., Ecker,J.R. and Nathans,J.
  TITLE     Transcriptional and epigenomic landscapes of CNS and non-CNS
            vascular endothelial cells
  JOURNAL   Elife 7, e36187 (2018)
   PUBMED   30188322
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2938)
  AUTHORS   Bibollet-Bahena,O., Okafuji,T., Hokamp,K., Tear,G. and
            Mitchell,K.J.
  TITLE     A dual-strategy expression screen for candidate connectivity labels
            in the developing thalamus
  JOURNAL   PLoS One 12 (5), e0177977 (2017)
   PUBMED   28558017
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2938)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   6  (bases 1 to 2938)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL683882.8 and AL691472.6.
            
            On Jan 10, 2022 this sequence version replaced NM_001356535.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (a). Variants 1 and 2
            both encode the same isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927934.6513509.1,
                                           SRR7345562.4052452.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               AL683882.8         65142-65296
            156-290             AL683882.8         66638-66772
            291-372             AL683882.8         74446-74527
            373-659             AL691472.6         2324-2610
            660-718             AL691472.6         3125-3183
            719-767             AL691472.6         3401-3449
            768-864             AL691472.6         3757-3853
            865-966             AL691472.6         4219-4320
            967-2938            AL691472.6         4648-6619
FEATURES             Location/Qualifiers
     source          1..2938
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 51.37 cM"
     gene            1..2938
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /note="transformation related protein 53 inducible protein
                     11"
                     /db_xref="GeneID:277414"
                     /db_xref="MGI:MGI:2670995"
     exon            1..155
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     exon            156..290
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     exon            291..372
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     exon            373..659
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     CDS             486..1100
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /note="isoform a is encoded by transcript variant 1; tumor
                     protein p53-inducible protein 11; Trp53 inducible protein
                     11 (Trp53i11); p53-induced gene 11 protein"
                     /codon_start=1
                     /product="tumor protein p53-inducible protein 11 isoform
                     a"
                     /protein_id="NP_001343464.1"
                     /db_xref="GeneID:277414"
                     /db_xref="MGI:MGI:2670995"
                     /translation="MAEASVSPCPSAEEKMAGKQPPPLMKKHSQTDLVSRLKTRKILG
                     VGGEDDDGEVHRSKISQVLGNEIKFAVREPLGLRVWQFLSAMLFSSVAIMALALPDQL
                     YDAVFDGAEVTSKTPIRLYGGALLSISLIMWNALYTAEKVIIRWTLLTEACYFGVQSL
                     VVTATLAETGLMSLGTVLLLASRLLFVIVSIYYYYQVGRKPKKV"
     exon            660..718
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     exon            719..767
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     exon            768..864
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     exon            865..966
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     exon            967..2938
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2913..2918
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /note="hexamer: AACAAA"
     polyA_site      2938
                     /gene="Trp53i11"
                     /gene_synonym="Tp53i11"
                     /note="major polyA site"
ORIGIN      
        1 agactcgggc gagcccagca gcgccaggag tccagcttgc cctgccctgc cctgccctgc
       61 ctgcctagcg cggcgccgcg atgtgagact ccccgggccg gagcgtccgc agggcacgcc
      121 agctccgcga gcgcagcacc ccgcgcgcca ggaacgatct ttggaaagtc agaatatact
      181 tcgggtttct gttgtcacct tcgtacagac agagcgctct cctagagtcc cctctggcct
      241 tcgtgtctta ggtgccctct gccttagctt ctcttcttct ggactctcag gttgtgagga
      301 ctgagcacaa gagagggccc ctcatctcag actccagtgt gcatctcagc atctagctca
      361 ttgcccatct cagagaggaa actgaggcag ccgcagcacc atcttctctt aggccccggg
      421 tggggcctgg ccacattctt ctcaccctac actgggacct ggggtctgga agtccagcag
      481 gaacgatggc tgaggccagt gtctccccat gtccctcagc agaagaaaaa atggcaggca
      541 aacagccccc tccgctcatg aagaagcaca gccagacgga tcttgtgagc cgcttgaaga
      601 ccagaaagat cctgggtgtg ggcggggagg atgatgacgg cgaagtgcac cggtccaaga
      661 tcagccaggt tttgggcaac gagataaagt ttgctgtgcg ggagcctctg gggctcaggg
      721 tctggcagtt tctttctgct atgctgttct ccagtgtggc catcatggcc cttgccctcc
      781 ctgatcagct ctacgatgca gtttttgatg gggctgaagt cacaagcaag acccccatcc
      841 gcctctacgg tggtgccctc cttagcatct ccttgatcat gtggaacgca ctctacacag
      901 ccgagaaggt catcatccgc tggactctgc tcactgaggc ctgctacttc ggggtgcagt
      961 ccctggtggt cactgccacg cttgctgaga cgggcctcat gtccctgggg accgtgctgc
     1021 tcctggccag ccgcctcctc tttgttattg tcagcatcta ctactattac caagtcggcc
     1081 ggaaacccaa aaaagtgtag caggctggga cctgcctggg cctggacctg ggcccgagca
     1141 gctggggact tcactgtcca tgggtcctag acaggcctgc aggcaggcag ggtgcacacg
     1201 ccttccttcc ctcccaggca ctccacggag tcatcttggg tctcctggga ttctaggagt
     1261 gacagaccag gctgtggcct ctgcacccca cccctcaccc ttgtgcaggg acaactcctt
     1321 gccctgtgtt tcttggcctc tagactctaa caggcagagt ctagagtaag ttttagggtc
     1381 tgggctgagt caaggtgagt tcctctgcca ggaagccctt tctaggaggt tgtgtcggcc
     1441 ccagcagggg ctctcagctt ctccccatcc agaaacccga tgtgtgagtc cctcatcaca
     1501 cacgcacaca cacacacaca cacacacaca cacacacaca cacacacaca cacacggtgt
     1561 ttctagagat ccagttgagg acatctagca aggggagtga ctgcctccct tgggccaagt
     1621 tccccagcct cagcctgcac atctctctct ttggcctgct ggagggtact ctgattctct
     1681 ggctggccgc ctgcgtccca gagcaccaga gtcccttccc gacaggctag ggttaggcaa
     1741 tgtaccacag gcctgatagt ccctggctcc tagctgccca taggctccta gtgcatgagg
     1801 aattctgagg agaggacaag tggggacatt tcctcggcat ggcctccaag gcctgcatgg
     1861 ctacacacct ggctcagtgc ctcctccaga tcccctcctg aggctgcccc aaggcctacg
     1921 ggttaaagcc aatagctgct cacatgcaac aacggaagga gattcaagag tctgccatcc
     1981 cttagcagcc cctaagtggg cctctagagc tgaagacaca cccctggtgc caccagcctg
     2041 tgtggcccct ccccttggcc ctagctccca gcacctccct acccttcagc agcaagcaca
     2101 ctaagagatt tggcccgagg cttctccctt ctgcaagggg gtggtcccct atacccgagg
     2161 aatctttctc tagggcacct gggctcacag cctccctggg ctcggttgtt cctgctgcca
     2221 agtgctctgt gaccatggcc tttgcctagt ggagggaact cagtggagga tgtgcccagc
     2281 agtggccggg gctgcttctg taaccaaggt ctggcagagt agcgattccc tgcgtgttca
     2341 ggaagggccc attgtgtata cctgcctctt gtcactggct tggtgccagt ccctcagtcc
     2401 cacctcttta ctcggaccat ggaccctgcc actgccagct cttagtacag tcccaactac
     2461 cgtagaccag gtgacatttg ttgacaccat tctcagaggt gttgaagatt tatcatcttg
     2521 aatcctccac aaatacagat acagtcccaa gggaggtagt cgtagaaatg gaagacgcca
     2581 gccctgcgca gcctgcaggg acatccgcca ggcttcccct cagcagcagg agcccaggtc
     2641 accctggtta aactgcagtg atacatttag gtgggtgggg tcaaggcata tgtggcctcc
     2701 gggagacacc tgcttggaag gaggcagtga tggagataga gccccactct gagtctgggc
     2761 tcagagtgcc ctgactgctc tcccccaccc catccccagc tcctcttgtc atgcttctgc
     2821 ctggccccca agactgcctc tgtcatggtc actatttatt cttggtccct ttttcttttt
     2881 gtaagaaaca gtcacaagaa aacaacaaca acaacaaaaa acaaccaatg agaaacaa
//
