LOCUS       NM_030159               2280 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus trophinin associated protein (Troap), transcript
            variant 1, mRNA.
ACCESSION   NM_030159 XM_283286 XM_912265
VERSION     NM_030159.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2280)
  AUTHORS   Watahiki,A., Waki,K., Hayatsu,N., Shiraki,T., Kondo,S.,
            Nakamura,M., Sasaki,D., Arakawa,T., Kawai,J., Harbers,M.,
            Hayashizaki,Y. and Carninci,P.
  TITLE     Libraries enriched for alternatively spliced exons reveal splicing
            patterns in melanocytes and melanomas
  JOURNAL   Nat Methods 1 (3), 233-239 (2004)
   PUBMED   15782199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC145227.1, BC080746.1 and BC100405.1.
            
            On or before Jun 26, 2009 this sequence version replaced
            XM_912265.2, XM_283286.4.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK050381.1, SRR11927938.4334668.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                BC145227.1         399-452
            55-836              BC080746.1         15-796
            837-2209            BC145227.1         1210-2582
            2210-2280           BC100405.1         2139-2209
FEATURES             Location/Qualifiers
     source          1..2280
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 55.8 cM"
     gene            1..2280
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /note="trophinin associated protein"
                     /db_xref="GeneID:78733"
                     /db_xref="MGI:MGI:1925983"
     exon            1..120
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            121..269
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     CDS             126..2132
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /note="trophinin-assisting protein"
                     /codon_start=1
                     /product="tastin"
                     /protein_id="NP_084435.1"
                     /db_xref="CCDS:CCDS57008.1"
                     /db_xref="GeneID:78733"
                     /db_xref="MGI:MGI:1925983"
                     /translation="MTTLQTNKDPHLRGVSPNPSKIPVLSQRCQDFSSVKSRSLDQEN
                     QDPRTPAQKPPRSTQRQRPLTDTAGLRSKTLHQTEKSPSLKTLRNPLEELKPSSGGSN
                     VGLVTHPQTEAIGAIEFVADPAALATILSGEGVKSCPQGYRSSLAQRVLVRERKGGTT
                     QRGQSARSSAYLAPRIPTHQVGPARASCFSRLEGPGLRDHTLSPPRLEALNPPPGSSH
                     SSTRPSLQELRRETCGGGRDGDCTDRRTSASQASRLLLKTPVQPASLPLRGEQEAVPH
                     SDDGGGRHHLGLAQRIPLKESLTNTRSTYSSMKRFAIRRKAQFTPLRSLPKVQQAQWL
                     SGLSPHSSPEEPALPWRQIAMKLFDQESRITLQKEPRKPSVASTSGPRPKRTPSHQEL
                     RIQRINILQQLLQQEVEGLAMGDGAPLNGGSAFDMTELKLPTAEISRTLTASEHNSGA
                     ALVGLSQHSGATEPLLSEECEEPQAYPEETKAAQPCSTTELKPPVPHRAEPELPEPCL
                     PALSGPPLPSCRGQAEPPMACPRTEPGASAACALEAGTPESSTQPCCNQGPPATASLT
                     FSSQSPVCASPSIHSLYPTGYSGPSSLAPRTLALRQRLRACLDTIHSFQEAHLDDECA
                     FYTSRAPPPGPTRVFTNPVVTTLEWQDALRFVPIGPVVPQDSPS"
     exon            270..459
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            460..617
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            618..755
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            756..835
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            836..912
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1031
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            1032..1115
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            1116..1175
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1310
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1890
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            1891..2084
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     exon            2085..2266
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2250..2255
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /note="hexamer: TATAAA"
     polyA_site      2266
                     /gene="Troap"
                     /gene_synonym="E130301L11Rik; tastin"
                     /note="major polyA site"
ORIGIN      
        1 ttggcgtatt ttacaaaccg gggaagcagc agcagccgca agcagaagca gaagcagaaa
       61 cccaagaaat cggcgaaaaa cccgaggaag tagaggtgac ccggagggcc tcctggaatg
      121 ccgccatgac taccctccaa accaataagg atccccatct ccgaggtgta tctcccaacc
      181 ctagcaagat tccagtactc tcccaaagat gccaagattt ttcctcagtc aagtcgcgct
      241 ctctggacca ggagaaccaa gatccgagga caccagcaca gaaaccaccg cgcagtactc
      301 aacgtcaacg tccactcact gacacggcag gcctcagatc gaaaaccttg caccagactg
      361 aaaaatcacc aagcttgaag accctgcgga accctctgga ggaactcaag cctagctctg
      421 ggggatcaaa tgtggggctt gtgacccatc cccagacaga ggccataggg gctatagagt
      481 ttgtggctga ccctgcagcc ctggccacca tcttgtcagg tgagggagtg aagagctgtc
      541 cccaggggta ccggtccagt ctggctcaga gagtgctagt ccgtgagaga aagggaggca
      601 ccacccagag gggccagagt gcaaggtctt ctgcatacct ggctcccaga atccccaccc
      661 atcaagtggg tcctgccagg gcttcctgct tctcaagact ggagggcccg ggactccggg
      721 accacacttt gtccccaccc cggttagagg ctctgaatcc acctccaggc tcctctcact
      781 cctccactcg acccagctta caggagctaa gaagagagac atgtggcggc ggcagggacg
      841 gggactgtac tgacagaagg acctcagcaa gccaagcctc aagactgctc ctgaagaccc
      901 cggttcagcc tgcttcctta cccctccgag gcgagcagga ggctgtccct cactccgacg
      961 acggaggggg aagacatcat ctgggtctgg ctcaacggat accattaaaa gaaagtctga
     1021 caaacaccag gagcacatat tcatccatga aacgctttgc cattcgacgg aaagcccaat
     1081 tcacacccct ccgatcgcta cctaaagttc agcaggctca gtggctgagt ggcctctccc
     1141 ctcattcctc ccctgaagag cctgccctgc cctggaggca gattgctatg aagttgtttg
     1201 accaggagag tcgcatcacc ttgcagaagg aacccaggaa accatcggtg gcaagcactt
     1261 ccgggcctcg ccccaagaga acccccagcc accaggagct aaggatacag cgcatcaata
     1321 ttttgcaaca gctcttgcag caggaggtag aggggctggc catgggcgat ggtgcccctc
     1381 tgaatggagg ctctgctttc gatatgactg aactaaagct cccgacggct gaaatttcta
     1441 gaactctgac agcttcagaa cacaattctg gagctgccct tgttggactg tcacaacact
     1501 ctggtgcgac agagcccctc ctttcggaag agtgtgagga gccacaggcc taccctgagg
     1561 agactaaggc ggctcagccc tgttctacca cagaactaaa gcccccagtg ccacacagag
     1621 ctgagccaga gctgccggag ccgtgccttc cagcactgtc cggaccccct ctgcctagct
     1681 gtcggggaca ggctgagccc cccatggcct gccctaggac agagccggga gcatcggcag
     1741 cctgcgctct ggaagctgga accccagagt ccagcacgca gccctgttgc aatcaggggc
     1801 ctccagcaac agccagcttg accttctcgt cccaaagccc agtctgtgcc agcccctcta
     1861 ttcactcact ctacccaaca ggctattcag gccccagcag cttggcccct cggaccctgg
     1921 ctctgaggca gcgcctcagg gcgtgtctcg acaccatcca tagcttccag gaggctcacc
     1981 tggatgatga atgcgccttc tacaccagcc gagccccacc tcccgggccc acccgggtct
     2041 tcaccaaccc cgtggtcaca acgcttgaat ggcaagatgc cctgcgtttc gttccaattg
     2101 gccctgtggt cccacaggac tctccatcat gactccggtc tttactgggc ttctcctctg
     2161 ctgcactcac ctcttccttt agccttattt attgttggcc tgcccattgg actgggagcc
     2221 aacgcccctt tatcctttaa taaagtttct ataaattgtg tttgaaaaaa aaaaaaaaaa
//
