LOCUS       NM_175113               2820 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus tRNA methyltransferase 6 (Trmt6), transcript variant
            1, mRNA.
ACCESSION   NM_175113
VERSION     NM_175113.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Liu,Y., Zhou,J., Li,X., Zhang,X., Shi,J., Wang,X., Li,H., Miao,S.,
            Chen,H., He,X., Dong,L., Lee,G.R., Zheng,J., Liu,R.J., Su,B.,
            Ye,Y., Flavell,R.A., Yi,C., Wu,Y. and Li,H.B.
  TITLE     tRNA-m1A modification promotes T cell expansion via efficient MYC
            protein synthesis
  JOURNAL   Nat Immunol 23 (10), 1433-1444 (2022)
   PUBMED   36138184
REFERENCE   2  (bases 1 to 2820)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2820)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   4  (bases 1 to 2820)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK028755.1.
            
            On Jun 10, 2007 this sequence version replaced NM_175113.2.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK028755.1, SRR1660817.300884.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164137 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 64.74 cM"
     gene            1..2820
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /note="tRNA methyltransferase 6"
                     /db_xref="GeneID:66926"
                     /db_xref="MGI:MGI:1914176"
     exon            1..251
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            252..379
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            380..489
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            490..581
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            582..665
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            666..790
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            791..1146
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1232
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1335
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            1336..1422
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     exon            1423..2820
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2734..2739
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /note="hexamer: GATAAA"
     polyA_site      2757
                     /gene="Trmt6"
                     /gene_synonym="3300001M20Rik; CGI-09; mKIAA1153"
                     /note="major polyA site"
ORIGIN      
        1 gaaagcggaa gcggcgtgca gcacgtgggg gcggtgccgg cggagacgca ggtccctcct
       61 ggtcgtgccg ggctcctagc ggctggagca aaaacggagg ttgaaattta cctggcttcc
      121 atggaggcat cagctgcgga gcagccgagc tcaccgcccc cgcctctcgg ggaccactgc
      181 atccatgacg gtgacttcgt ggtgctgaag cgagaagatg tgttcaaagc agtgcaagtc
      241 cagcggagaa aaaaagtaac ttttgaaaag cagtggttct acctggataa cgccatcggc
      301 catagttacg gctcagcgtt tgacgtgagc agtggaggca gccttcagct caggaagaag
      361 ctggaggagc ccgcgtcaga gaccaaagaa gcaggcactg ataatcgaaa tatagttgat
      421 gatggaaagt cccagaaact tactcaagat gatataaaag ctctgaaaga caagggcatt
      481 aaaggagagg aaatagttca gcagctaatt gaaaatagta caacattccg tgacaagaca
      541 gaatttgccc aagataaata tattaaaaag aagaagaaaa aatatgaagc catcgttact
      601 atcttgaagc catctacccg tattctttca attatgtatt atgcaagaga acctggaaaa
      661 attaaccaca tgagatatga tacactagcc cagatgttga cgttgggaaa tatccgtgcc
      721 ggcaataaaa tgattgtcat ggaaacgtgc tcgggcttgg tgctaggtgc catgatggaa
      781 cgaatgggag gctttggctc cattattcag ctgtatcctg gagatggacc cgttcgggcg
      841 gcaacagcat gttttggatt tcccaaatct ttcctcagtg gtctttacga gttccctctc
      901 aacaaagtaa acagtctcct caatgggaca ttttctgctg agatgctgtc ctcagagcct
      961 aaagacagca ctccagttga agaaagtaac ggtgagcttg aggagaaaga gattgctgaa
     1021 caagcggatg aagacaacat tgtggatgcc gcagaaaaca actcaggaga acagagacca
     1081 atggagattg ttcctgggga cccagagaat aaggagccca aagaaaaaag aagcaaaaga
     1141 gattatattc aggaaaagca aaggagacaa gaagagcaga ggaaaagaca tctggaggct
     1201 gctgctctgc tgggagaaag aaatgcagat ggtttgattg tggccagtcg tttccacccc
     1261 acgcccctgc tgctgtcttt gctggacttt gtagccccgt caaggccgtt tgtggtctac
     1321 tgtcagtata aagagccttt gttggaatgc tacacaaaac ttcgggagag gggaggagtc
     1381 attaacctga ggttgtctga aacctggctc agaaattacc aggttctgcc agatcggagt
     1441 catcccaaat tattgatgag tggcggtgga gggtaccttc tgtcagggtt cactgttgtc
     1501 tcagacagcc ttcgggcaga ccccagcctc aagtcctgca caggcgcttt agacccacac
     1561 aaggctgagg agccagcagc taaaaaacag aaatgcatgg aatctgcctc ttaactctta
     1621 ggagattaat gtttgttcca aggcattctg cagctggtaa ttacacttta agtgtcatca
     1681 ctaaaatttt ctccttgtcc taagagtgtg tgtacacctg ttcctgggaa gaagtaagcc
     1741 tttcgtttgc ctctgttgca gaaggattag tcagggctgc aactctgatg gacagtaatg
     1801 gattggtaca gcagtcctgt atcacagcag gctcggtact taaaggatct gcagattcct
     1861 tgggaatgtc aacaccttga aaatgttgat gtgtaagtct ttgtttatat tttaagcaaa
     1921 gatgataata caaactagcc acaacatggt gagcagtgaa aggaaatttc ctctcatcca
     1981 ctcttcctcc taagcaatat ggatgtgtgt gcctgtgaga tttacagtac caaaacgtct
     2041 acccttgccc tgcaatgaaa gaagcttttt tttagatact agattttgtt attttaatag
     2101 tcaatggcct gaggaagatc caggtatttc ttttcctgcc tctccttttt tggtacatag
     2161 aaagggtggt gggtgctcct ttgcggtgaa agggtctcct cagttctggg tgaagtgatt
     2221 ggaacttctg tgtactatta aacaattggg tttttctctc tctagacaca gacacacaga
     2281 aacctgtatc agtgttggta tatatgcata cacatagatg tatctatatg tcagcatgga
     2341 cagaatgtac tacctgtggt gggacagaga aggaatacac gtttatttga actgtggtaa
     2401 agacttgtgc aggacagagc agctcttggt gtgttgctgt tactcttgtc aagtatgttt
     2461 caagtgcctt ctggggattt ctcacactgg tctgtacatg tctgctggtg tgaggtgggt
     2521 gtctttatct gctctgaaag aagtataatc aaattcctta accatctcca ttgtaaggaa
     2581 taaaaatgtc tagagtaatt gaaggctctt gttcccttga gagtcttgtc ctgttcacta
     2641 ggacttgtgc ggtgttcttg tcatcataga agcctggcca gcgtggagca tcttggaaga
     2701 taaaaatgct ttcctaataa cttgtgctgt tctgataaag gctgctgtga ttaccaactt
     2761 tggtttttat tcctttttct ctaaacaatt gcttttaaag aataaaattt tcctactctg
//
