LOCUS       NM_001033775            1932 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus tripartite motif-containing 80 (Trim80), mRNA.
ACCESSION   NM_001033775 XM_484093 XM_910193
VERSION     NM_001033775.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1932)
  AUTHORS   Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V,
            Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs
            P, Fu J, Nefedov M, de Jong PJ, Stewart AF and Bradley A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL645470.20.
            
            On May 2, 2007 this sequence version replaced NM_001033775.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133415.1, BC157912.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                AL645470.20        184218-184279       c
            63-106              AL645470.20        184074-184117       c
            107-771             AL645470.20        183079-183743       c
            772-867             AL645470.20        179713-179808       c
            868-1101            AL645470.20        179280-179513       c
            1102-1264           AL645470.20        178256-178418       c
            1265-1327           AL645470.20        178004-178066       c
            1328-1932           AL645470.20        176556-177160       c
FEATURES             Location/Qualifiers
     source          1..1932
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 80.84 cM"
     gene            1..1932
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /note="tripartite motif-containing 80"
                     /db_xref="GeneID:432613"
                     /db_xref="MGI:MGI:3588186"
     exon            1..62
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..1884
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /note="novel zinc finger, C3HC4 type (RING finger) and
                     SPRY domain containing protein"
                     /codon_start=1
                     /product="tripartite motif protein 47-like"
                     /protein_id="NP_001028947.1"
                     /db_xref="CCDS:CCDS36372.1"
                     /db_xref="GeneID:432613"
                     /db_xref="MGI:MGI:3588186"
                     /translation="MKQRPQRKERRRQSSVHRATKYLALMDMQKISRSAQDKPPSQLS
                     SQPSRTPLHLLMGSNSSQHMLEDQVLCPICLEVFCNPVTTACGHNFCMTCLQNFWDHQ
                     AAIGETYYCPQCREAFSSRPRLCKNVILGEMVACFTQAKSQTSGSLWGLAGPTDVPCD
                     FCSPQKLRAAKSCLQCVASLCEKHLRSHFEDQLFQDHQLLDPVWDLTNRLCRKHRKLR
                     QLYCRTEGSCVCGACLLEEHKNHDTTPLEDERARKEVEVRKIQANVENQMLIIASDSQ
                     KHQGRVSFLSKLIQTMRDEVDTCFSEILHEIKQLQMKVLDFVEKEEAAALGKLGNSIQ
                     QSHNRLLKLEGDSVWLHSLLANRSDEQFLQEFPKLKHFPACVEPLLGTNCEETQSFLQ
                     LPETLSQLRIRLMDIGLSFINQLLLKGIRMSSYEVLPGTVERKTLLQNYCNLNFDPCT
                     ASEELFLFKETHSVLNLGILLEPSTTNSPLPGFKQWPQVLCCPGLSEGCHYWEAEVSN
                     SWMCLGVTYRRSPPLSGRPRRNIVYLLGRNPYSWCLEWDSLKFSVWHNNTQTVLHGSY
                     HHTLGVALDFRTGCLSFYSVAGDVNLLYRFLTSFLEPLYPAVMVSSGASLTLKQYPEA
                     "
     exon            63..106
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            107..771
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            772..867
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            868..1101
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1264
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1327
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            1328..1932
                     /gene="Trim80"
                     /gene_synonym="4933422H20Rik; Trim47l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagagacca tgaaacagcg gccacagaga aaggagagaa gacggcaatc atcggtccac
       61 agggcaacaa aatatctggc tctcatggac atgcagaaga tctcaagatc agcccaggac
      121 aaacccccct cacagctctc ttcccagccc tccagaaccc cgctccatct cctgatgggc
      181 agcaacagca gtcagcacat gttggaagac caagtcctct gtcccatttg cctggaggtg
      241 ttctgcaacc cagtcactac cgcctgcggc cataacttct gtatgacttg ccttcagaat
      301 ttctgggacc accaggctgc cattggagag acttactatt gcccccagtg cagagaggcc
      361 ttctccagca ggccccgcct ctgcaagaac gtcatcctcg gggagatggt ggcttgcttc
      421 acccaggcca agagccagac ctcagggtcc ttgtggggcc tggctggccc cacagatgtg
      481 ccctgtgact tttgctctcc gcagaagctg agggcagcca agtcatgcct gcagtgtgtg
      541 gcttccttgt gtgagaaaca tctgcgcagc cactttgagg accagctgtt ccaggaccac
      601 cagctgttgg acccagtgtg ggacctcacg aaccgcttgt gccgcaagca tcgcaagctc
      661 cggcagctgt attgccgcac ggagggcagc tgcgtgtgcg gagcctgcct attggaggag
      721 cacaagaacc atgacaccac ccccctggag gatgaacggg cccgcaaaga ggtggaagtt
      781 cggaagattc aggccaatgt ggagaaccag atgctgatca ttgcctctga cagtcagaaa
      841 caccagggac gagtgagttt tctctcgaaa ctgattcaga ccatgcgaga cgaggtggac
      901 acctgcttct cagagatcct ccatgagatt aaacagctgc agatgaaggt cttggatttt
      961 gtggagaagg aggaggcggc cgccctagga aagctgggca actctatcca gcaaagccac
     1021 aaccggctgc tcaagttgga gggggacagc gtctggctcc acagcctgct cgccaacagg
     1081 agtgatgagc aattcctaca ggagttcccc aaactgaagc acttccctgc ctgcgtggaa
     1141 cccttgctag gcaccaactg tgaggagaca cagagcttcc ttcagctgcc agagaccctg
     1201 tcgcagctcc ggatcaggct gatggacata gggcttagct ttatcaacca gcttctcttg
     1261 aagggaatca ggatgagctc ctatgaggtg ctgcccggaa ctgtggagag aaagacactg
     1321 ctccagaatt actgcaacct gaactttgac ccctgcacgg ccagcgaaga gctgttcttg
     1381 ttcaaggaaa cacactcggt gttgaacttg ggcatccttc tggagccctc gaccaccaac
     1441 agcccgttac cgggcttcaa gcagtggccc caggttctgt gctgcccagg cctgtccgaa
     1501 ggctgtcact actgggaggc tgaggtgtcc aactcgtgga tgtgcctggg agtcacctac
     1561 cgtcgcagcc ctccgctgag cggtcgcccc cgtcgcaaca tcgtctacct gctgggccgc
     1621 aacccctact catggtgtct ggagtgggat tcgctcaagt tctctgtgtg gcacaacaac
     1681 acacagacgg tgctacacgg atcctaccac cacacgctcg gcgtggcgct ggacttcagg
     1741 actggctgcc tgtccttcta cagcgtggcg ggcgacgtga acctcctcta ccgcttcctc
     1801 acctccttcc tcgaacccct gtaccccgcg gtcatggtca gcagtggagc ctcgctcaca
     1861 ctcaagcagt atcctgaggc ataggtagcg cccgccggcc caggcttgct gccaataaag
     1921 ttagactcta tg
//
