LOCUS       NM_198601               3083 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus tripartite motif-containing 52 (Trim52), transcript
            variant 1, mRNA.
ACCESSION   NM_198601 XM_139221
VERSION     NM_198601.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3083)
  AUTHORS   Ma JP, Yao CZ, Jia ZQ, Wang AM, Miao XX, Gao XX and Su LP.
  TITLE     TRIM52 aggravated inflammation and pyroptosis in dextran sulfate
            sodium-induced inflammatory bowel disease through activation of the
            TLR4/NF-kappaBs pathway
  JOURNAL   Allergol Immunopathol (Madr) 51 (1), 159-167 (2023)
   PUBMED   36617836
  REMARK    GeneRIF: TRIM52 aggravated inflammation and pyroptosis in dextran
            sulfate sodium-induced inflammatory bowel disease through
            activation of the TLR4/NF-kappaBs pathway.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126691.3, AK029521.1 and AV266877.1.
            
            On May 25, 2007 this sequence version replaced NM_198601.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK029521.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                AC126691.3         86772-86834
            64-2364             AK029521.1         70-2370
            2365-2965           AC126691.3         89136-89736
            2966-3083           AV266877.1         149-266
FEATURES             Location/Qualifiers
     source          1..3083
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 56.16 cM"
     gene            1..3083
                     /gene="Trim52"
                     /gene_synonym="4921513B05Rik"
                     /note="tripartite motif-containing 52"
                     /db_xref="GeneID:212085"
                     /db_xref="MGI:MGI:3045276"
     exon            1..3083
                     /gene="Trim52"
                     /gene_synonym="4921513B05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             713..1414
                     /gene="Trim52"
                     /gene_synonym="4921513B05Rik"
                     /codon_start=1
                     /product="tripartite motif-containing 52"
                     /protein_id="NP_941003.1"
                     /db_xref="CCDS:CCDS27323.1"
                     /db_xref="GeneID:212085"
                     /db_xref="MGI:MGI:3045276"
                     /translation="MATSTRPPSPMQSLREEAVCAICLDYFKDPVSIGCGHNFCRGCV
                     TQLWGKEDEQDREQPAVQERVIREVLFPRYTEQEQHRAHAGQWVGHSHRQHQGNANSE
                     WDDEEEDRNSLQGLVHDLRIRVFPEERDEPPHNGHQYHRFGRYRHRHRHPPIFHRGPP
                     HPPVRRQLYPDARVPSPHAQVPPPHAQVPSLPRPTPQVFSCPQCRRTFPSRSFRPNLQ
                     LANMVHIIRQICHTP"
ORIGIN      
        1 tatagcggag ctgccgggca tgtgaggcag aggtgggccg aggctgctgg ctgctgcctt
       61 gtgcggggct tccccgaggc tccagtcagc tgcgtgcttc tgtgccagcg ccttctggct
      121 tcggagcgac ggctgccgtg ccgtgagttg gtcttcctca gggaagccag ggaagcccag
      181 gccagggcgg tggcagcagg ttgtagtcgt ctacaaaacc tgttggagtc gctcctgtca
      241 cccgttagcc gggcagcgaa gaggccttag ccctcagcgc ccgtcgggtg ggcagtgcgg
      301 cctaccgcat ttgggacccc ccttgcttgg gtagggaggc cttgagtcct tagcgcccat
      361 cggcttggca gcaaggccta cggccccctc agcagggcag cgaagaggcc ttagtcctca
      421 gcgcccgttg gctaggcagt gaggcctact gcgtttgcgc ccaacgacag ggcagcaagg
      481 aggtcttagt cctcagcgcc ccttggcttg gctgcgaggc ctaccgcctt tgcgtccttg
      541 cctgggcagg gagatttggg gcctttggtc cccttggcag ggaagggagt cctctcacct
      601 ttgtgctctt gggtggtaga ggctagacct tccacttgtg gtttcgtgct ttgtgcttct
      661 tggcagggca gcgagggcct ctcagtttct gaggaccttt tgtgctctta agatggccac
      721 ctctacacgg cctcccagcc ctatgcagtc acttcgggaa gaagcagtgt gtgccatctg
      781 tctggattat tttaaggacc ccgtgtccat tggctgtggg cacaacttct gccgagggtg
      841 tgtgacccag ctgtggggca aggaagatga gcaggaccgg gaacagcctg ctgtgcagga
      901 gcgcgtcatc cgggaggttt tgtttcctag gtacaccgag caggagcagc acagagcaca
      961 tgcaggacag tgggtcggtc atagccatag acagcatcag ggcaatgcaa actctgagtg
     1021 ggatgacgag gaagaagaca ggaacagttt acaaggattg gttcatgacc tgagaattag
     1081 ggtttttcca gaagagagag atgaaccccc ccacaatggc caccagtacc atcggtttgg
     1141 tcgctaccgc catcgccacc gccaccctcc aatcttccac cgtggtcccc cacatccgcc
     1201 tgtgcgtcgg cagctctatc cagacgcccg ggttccttct ccacatgccc aggttcctcc
     1261 tccacatgcc caggttcctt ctctacctcg gcccacacca caggtcttca gctgcccgca
     1321 atgccgaagg acttttccaa gtcgcagttt tcgacccaat ttgcagctgg ccaacatggt
     1381 ccatataatt cgccagattt gccatactcc atgaagcttg caaagcttgt gctctaaata
     1441 tgaggaaacc ctggagctct tcagtaaggt agaaaaaaag cccaggtgta ggtgtgtcta
     1501 gattcctggt actacaaaaa tatgaatgta gtgccattgg atgaagtatt taaagaaaac
     1561 aaggaacaaa acaaaacaaa acaaaaaaaa ctgagaaact tatagtacat ttcagtctca
     1621 gtgctatccc agttttgggg aggaattaaa aaattcaaaa tttcattagt gcctgcagct
     1681 ttaaattgga aagagtagtt gtatttagct cagtagtagc agaatgattg tttgcctagc
     1741 atgcccccat tttccaattt attttgaatt aatgactatc aaggttcagt tttaggaaat
     1801 attactcctt tgttgctatt agcagagaat ttatttgtgg gaacgaagaa aactgctttg
     1861 cttagcttca aaattaggct ttcagaactg aatgttttca tgagcctggt atttgaatac
     1921 ttagaagatt tttgaggttg ttattagctg atttgggaac atactttata ggaatctatg
     1981 tcaatagttt tatagtaatg tcagattttt agctaaagtt gaaaagttgt caagatacac
     2041 tgtgctatct gtggattgct ttggaaatct tcaggttttt gtcactataa gctaaggaag
     2101 aatatgctta gttcagattt gcttttgaag atagggagat ctttcaatgt ttttgttgga
     2161 tctaaagttc cttagtcatt aaagagaact gcattcagca tttggacaac aattccaata
     2221 ttagggaacc aatgaaaagt tgaaatggaa aatatgaaac tttgaaaaat tgaaactttc
     2281 acagaaattc agtggccctg aaaatggcag taggcaaata ttaacatttt tgttgtgaag
     2341 tatttaaagc aaaacttgcc aaaaccaggt atataggtat atgtttactg attcttataa
     2401 aaattgccta attttgttgg ccaagaacca gatttatgaa tattatatct ttaaatttaa
     2461 gttaatatac aaaataatgg atttcattat gagggtttca tacttgaata tcattgtact
     2521 ttgctcatat ttgccgcctc tatcatactt tcctcccaac tagtctctat tcatatcaca
     2581 tgatgtcaga tacaaaaaat tactaagcct aaattctaaa ggatttttcc attgtttttc
     2641 accattaccc tttcttgcaa ccctatcctt cttcccttta gagcctcgtt ttcctgggta
     2701 gtccccattc aatgctattt caaggaaaca aaaataatat tcagaaatac tttaggtggt
     2761 gtgtttgtaa caagttaaaa atctgtgtgt ggtagctttg agaggataaa tgtgtttcac
     2821 cttgtccagt ttttactgaa taggtgcaaa aagactggat aagtcttact gttttgacta
     2881 gaaacttaaa gagaaacttg tgtgtaaact ttaaatgcag atatacattg catttatttt
     2941 tcagttttct tatgtttttc tgttcttatt tttcccttgc tttgtttaac tggaaggaaa
     3001 ctgttaatgc cttgttaaaa gtgacttaag ttttattgta ttttatacag tatccaataa
     3061 agacaaattt aagtttcaca gtg
//
