LOCUS       NM_001170884            2262 bp    mRNA    linear   ROD 11-JUN-2024
DEFINITION  Mus musculus tripartite motif-containing 43B (Trim43b), mRNA.
ACCESSION   NM_001170884 XM_001000540
VERSION     NM_001170884.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Stanghellini,I., Falco,G., Lee,S.L., Monti,M. and Ko,M.S.
  TITLE     Trim43a, Trim43b, and Trim43c: Novel mouse genes expressed
            specifically in mouse preimplantation embryos
  JOURNAL   Gene Expr Patterns 9 (8), 595-602 (2009)
   PUBMED   19703589
  REMARK    GeneRIF: We describe the identification and characterization of
            Trim43a, Trim43b, and Trim43c genes, whose expression are
            restricted to preimplantation stages and peak at the 8-cell to
            morula stage
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CT030686.6.
            
            On Jan 5, 2010 this sequence version replaced XM_001000540.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN00849384, SAMN00849387
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-300               CT030686.6         55059-55358         c
            301-715             CT030686.6         53791-54205         c
            716-811             CT030686.6         53116-53211         c
            812-1045            CT030686.6         51884-52117         c
            1046-1068           CT030686.6         50822-50844         c
            1069-1169           CT030686.6         50052-50152         c
            1170-2262           CT030686.6         47147-48239         c
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 47.24 cM"
     gene            1..2262
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /note="tripartite motif-containing 43B"
                     /db_xref="GeneID:666747"
                     /db_xref="MGI:MGI:3648996"
     exon            1..300
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /inference="alignment:Splign:2.1.0"
     exon            301..715
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /inference="alignment:Splign:2.1.0"
     CDS             305..1642
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /codon_start=1
                     /product="tripartite motif-containing protein 43B"
                     /protein_id="NP_001164355.1"
                     /db_xref="CCDS:CCDS52884.1"
                     /db_xref="GeneID:666747"
                     /db_xref="MGI:MGI:3648996"
                     /translation="MESDNLQDPQEETLTCSICQGIFMNPVYLKCGHKFCEACLLLFQ
                     EDIKFPAYCPMCMQPFNQEYINDISLKKQVSIVRKKRLMEYLNSEEHKCVTHKAKKMI
                     FCDKSKILLCHLCSDSQEHSGHTHCSIDVAVQEKMEELLKHMDSLWRRLKIQQNYVEK
                     ERRTTLWWLKSMKLREEVIKRVYGKQCPPLSEERDQHIECLRHQSNTTLEELRKSEAT
                     IVHERNQLTEVYRELMTMSQRPYQELLVQDLDDLFRRSKLAAKLDMPQGMIPRLRAHS
                     IPGLTARLNSFRVKISFKHSIMFGYTSLRPFDIRLLHESTSLDSAETHRVSWGKKSFS
                     RGKYYWEVDLKDYRRWTVGVCKDPWLRGRSYVATPTDLFLECLRKDDHYILITRIGGE
                     HYIEKPVGQVGVFLDCEGGYVSFVDVAKSSLILSYSPGTFHCAVRPFFSAVYT"
     exon            716..811
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /inference="alignment:Splign:2.1.0"
     exon            812..1045
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..1068
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1169
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..2262
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1956..1961
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /note="hexamer: ATTAAA"
     polyA_site      1978
                     /gene="Trim43b"
                     /gene_synonym="EG666747; Gm8269"
                     /note="major polyA site"
ORIGIN      
        1 agattggcca aggtgttagt tcaatctctc atccatttag aataatccca cttaagggag
       61 ctcatctatt ggaagcatta gtaaaaggga ggaagtgggt gtggtcttta gagactctaa
      121 gtacatccct ggggcccacc aggttcattc ttctccagac cagaagtgga gtgtttctaa
      181 ccttttgctc cagacactgc tagatctatc acctcactct ctgaggatct gatctcagag
      241 ctgagctagt atcgcattgc taccaagcat tgctaagcag ggaccggaat aattgcttgg
      301 aaaaatggaa tcagacaatt tacaagaccc tcaggaggaa acactcacct gctccatctg
      361 ccagggtatc tttatgaatc cagtttattt aaagtgtggc cataagttct gcgaggcatg
      421 tctcttactt tttcaagaag acatcaaatt tcctgcctac tgccccatgt gtatgcaacc
      481 atttaaccag gaatatataa atgacatttc tctgaagaag caggtgtcca ttgtcagaaa
      541 gaaaaggctc atggaatatt tgaattctga ggagcacaag tgtgtgaccc acaaggcgaa
      601 aaagatgatc ttctgtgata agagcaagat cctcctctgt cacctgtgtt ctgactccca
      661 ggagcacagc ggtcacacac actgttccat tgatgtagct gttcaggaga aaatggagga
      721 acttctaaag cacatggact cattatggcg gaggctcaaa atccagcaga attatgtaga
      781 aaaagagagg agaacgacct tgtggtggtt gaagtccatg aagctacggg aggaagtgat
      841 caagagagtg tatggaaaac aatgtccacc cctcagtgaa gaaagggatc aacacataga
      901 gtgtttgaga catcaaagca acactacttt agaggagctc aggaaaagtg aagctacgat
      961 agtccacgag agaaatcaac taacagaggt gtatcgggag ctgatgacaa tgtcccagag
     1021 gccataccag gagctgctgg tgcaggactt ggatgacttg ttcagaagga gtaagctagc
     1081 ggcaaagctg gacatgccac agggtatgat accaagactc cgtgcccatt ccattcctgg
     1141 gctgactgca aggctcaact ccttccgagt gaagatttcc tttaaacatt caatcatgtt
     1201 cggctacacc tcactcagac cttttgatat cagacttctc catgaaagca catctctgga
     1261 ttcagctgaa acccatcgtg tttcctgggg aaaaaagagc ttctccaggg gaaaatacta
     1321 ctgggaggtg gatttgaagg actataggcg gtggactgta ggagtctgta aggatccctg
     1381 gttaaggggg agaagctatg tggcgacacc cacagatcta tttcttgagt gtttgagaaa
     1441 ggacgatcat tacattctca tcacccgcat aggaggtgaa cactatatag agaagccagt
     1501 tggccaagtt ggcgtgttcc ttgattgtga gggtggatat gtaagtttcg tggatgtagc
     1561 caagagttcc ctcatactca gctactctcc tggaactttc cattgtgctg tcaggccttt
     1621 cttctctgct gtctacacat aatcatagga atccagtatg ctagtgcttt tctagtactt
     1681 ctatgataat gtgtcccctc tttattgtga tggtttgtgt atgcttggcc aggggagtgg
     1741 cactattaga atgtgtggcc cggttggagt tggtgagtca ctgtgggtgt gagctttaag
     1801 actctcatct tagctgtgtg gaagtcagtc ttccactagc agcgttcaga tgaagatgta
     1861 gaactctcat ctgggtcttt accatgccta cctagatatt gccatgatcc cactttgata
     1921 atggattgaa cctctaaacc tgaaggccag ctctaattaa atgttgtcct ttataagact
     1981 tgccttggtc atggtgtctg ttaatagcag taaaacccta actaagacat gttaaaatga
     2041 tattaaggga tggagagatg gctcagaggt taagagcact gactcttggt taagggactg
     2101 ttcttctgaa ggtcctgtgt tcaaatcccc acaaccacat ggtggctcac acccatctgt
     2161 aatgagatct gatgtcctct tctggtgtgt ctgaagacag ctacagtgta cttacatata
     2221 ataaataaat aaatttaaaa aatataaaat gatattaaat gt
//
