LOCUS       NM_001357687            1989 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus tripartite motif-containing 43A (Trim43a), transcript
            variant 1, mRNA.
ACCESSION   NM_001357687 XM_017313486
VERSION     NM_001357687.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1989)
  AUTHORS   Stanghellini,I., Falco,G., Lee,S.L., Monti,M. and Ko,M.S.
  TITLE     Trim43a, Trim43b, and Trim43c: Novel mouse genes expressed
            specifically in mouse preimplantation embryos
  JOURNAL   Gene Expr Patterns 9 (8), 595-602 (2009)
   PUBMED   19703589
  REMARK    GeneRIF: We identified a 5kb DNA fragment that covers upstream
            region of Trim43a as a putative promoter, which can drive the
            expression of mStrawberry fluorescent protein in a manner similar
            to endogenous Trim43 genes.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163666.2 and BC141236.1.
            
            On Nov 4, 2017 this sequence version replaced XM_017313486.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC141236.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164132 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-266               AC163666.2         109225-109490       c
            267-1776            BC141236.1         1-1510
            1777-1989           AC163666.2         101557-101769       c
FEATURES             Location/Qualifiers
     source          1..1989
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 47.24 cM"
     gene            1..1989
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /note="tripartite motif-containing 43A"
                     /db_xref="GeneID:547109"
                     /db_xref="MGI:MGI:3645218"
     exon            1..300
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /inference="alignment:Splign:2.1.0"
     exon            301..715
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /inference="alignment:Splign:2.1.0"
     CDS             305..1645
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /note="isoform 1 is encoded by transcript variant 1;
                     tripartite motif-containing protein 43A"
                     /codon_start=1
                     /product="tripartite motif-containing protein 43A isoform
                     1"
                     /protein_id="NP_001344616.1"
                     /db_xref="GeneID:547109"
                     /db_xref="MGI:MGI:3645218"
                     /translation="MESDNLQDPQEETLTCSICQSIFMNPVYLRCGHKFCEACLLLSQ
                     EDIKFPAYCPMCMQPFNQEYINDISLKKQVSIVRKKRLMKYLNSKEHKCVTHKAKKMI
                     FCDKSKILLCHLCSDSQEHSGHTHCSIDVAVQEKMEELLKHMDSLWRRLKIQQNYVEI
                     ERRTTLWWLKSVKLREEVIKRVYGKQCPPLCEERDQHIECLRHQSNTTLEELRKSEAT
                     IVHERNQLIEVYRELMTMSQRPYQELLVQDLDDLFRRSKLAAKLDMPQGMIPRLHAHS
                     IPGLTARLNSFRVKISFKHSIMFGYTSVRPFDIRLLHESTSLDSAETHRVSWGKKSFS
                     RGKYYWEVDLKDHEQWTVGVRKDPWLRGRSYAATPTDLFLLECLRKEDHYILITRIGG
                     EHYIEKPVGQVGVFLDCEGGYVSFVDVAKSSLILSYSPGTFHCAVRPFFSAVYT"
     exon            716..811
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /inference="alignment:Splign:2.1.0"
     exon            812..1045
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..1068
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1169
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1989
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1966..1971
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /note="hexamer: ATTAAA"
     polyA_site      1988
                     /gene="Trim43a"
                     /gene_synonym="EG547109; Gm6021"
                     /note="major polyA site"
ORIGIN      
        1 agaatggcca aggtgttagt tcaatctctc atccatttag aataatccca cttaaggaag
       61 ctcatctatt ggaagcatta gtaaaaggga ggaagtgggt gtggttttta gagactctaa
      121 gtacatccct ggggcccacc aggttcattc ttctccagac cagaggtaga gtgtttctaa
      181 ccttttgctc cagacactgc tagatctatc acctcactct ctgaggatct gatctcagag
      241 ctgagcgagt atcgcattgc taccaaccat tgctaagcag ggacgaggat aattgcttgg
      301 aaaaatggaa tcagacaatt tacaagaccc tcaggaggaa acactcacct gctccatctg
      361 ccagagtatc tttatgaatc cagtttattt aaggtgtggc cataagttct gcgaggcatg
      421 tctcttactt tctcaagaag acatcaaatt tcctgcctac tgccccatgt gtatgcaacc
      481 atttaaccag gaatatataa atgacatttc tctgaagaag caggtgtcca ttgtcagaaa
      541 gaaaaggctc atgaaatatt tgaattctaa ggagcacaag tgtgtgaccc acaaggcaaa
      601 aaagatgatc ttctgtgata agagcaagat cctcctctgt cacctgtgtt ctgactccca
      661 ggagcacagt ggtcacacac actgttccat tgatgtagct gttcaggaga aaatggagga
      721 acttctaaag cacatggact cattatggcg gaggctcaaa atccagcaga attatgtaga
      781 aatagagagg agaacgacct tgtggtggtt gaagtccgtg aagctacggg aggaagtgat
      841 caagagagtg tatggaaaac aatgtccacc cctctgtgaa gaaagggatc aacacataga
      901 gtgtttgaga catcaaagca acactacttt agaggagctc aggaaaagtg aagctacgat
      961 agtccacgag agaaatcaac taatagaggt ttatcgggag ctgatgacaa tgtcccagag
     1021 gccataccag gagctgctgg tgcaggactt ggatgacttg ttcagaagga gtaagctagc
     1081 ggcaaagctg gacatgccac agggtatgat accaagactc catgcccatt ccattcctgg
     1141 gctgactgca aggctcaact ccttccgagt gaagatttcc tttaaacatt caatcatgtt
     1201 cggctacacc tcagtcagac cttttgatat cagacttctc catgaaagca catctctgga
     1261 ttcagctgaa acccatcgtg tttcctgggg aaaaaagagc ttctccaggg gaaaatacta
     1321 ctgggaggtg gatttgaagg accatgagca gtggactgta ggagtccgta aggatccctg
     1381 gttaaggggg agaagctatg cggcgacacc cacagatcta tttcttcttg agtgtttgag
     1441 aaaggaagat cattacattc tcatcacccg cataggaggt gaacactata tagagaagcc
     1501 agttggccaa gttggcgtgt tccttgattg tgagggtgga tatgtaagtt tcgtggatgt
     1561 agccaagagt tccctcatac tcagctactc tcctggaact ttccattgtg ctgtcaggcc
     1621 tttcttctct gctgtctaca cataatcata ggaagctgga atccagtatg ctagtgcttt
     1681 tccagtactt ctatgataat gtgtcccctc tttattgtga tggtttgtat atgcttggcc
     1741 aggggagtgg cactattaga atgtgtggcc cggttggagt tggtgagtca ctgtgggtgt
     1801 gagctttaag actctcatct tagctgtgtg gaagtcagtc ttccactagc agccttcaga
     1861 tgaagatgta gaactctcat ctggatcttt accatgccta cctagatatt gccatgatcc
     1921 cactttgata atggattgaa cctctaaacc tgaaggccag ctctaattaa atgttgtcct
     1981 ttataagac
//
