LOCUS       NM_030219               2465 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus tripartite motif-containing 42 (Trim42), mRNA.
ACCESSION   NM_030219 XM_906332
VERSION     NM_030219.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2465)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2465)
  AUTHORS   McMahon,A.P., Aronow,B.J., Davidson,D.R., Davies,J.A., Gaido,K.W.,
            Grimmond,S., Lessard,J.L., Little,M.H., Potter,S.S., Wilder,E.L.
            and Zhang,P.
  CONSRTM   GUDMAP project
  TITLE     GUDMAP: the genitourinary developmental molecular anatomy project
  JOURNAL   J Am Soc Nephrol 19 (4), 667-671 (2008)
   PUBMED   18287559
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK019654.1, AC126931.4 and BX636384.1.
            
            On Oct 14, 2006 this sequence version replaced NM_030219.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019654.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2148              AK019654.1         2-2149
            2149-2199           AC126931.4         12574-12624
            2200-2459           AK019654.1         2201-2460
            2460-2465           BX636384.1         1-6                 c
FEATURES             Location/Qualifiers
     source          1..2465
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 51.06 cM"
     gene            1..2465
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /note="tripartite motif-containing 42"
                     /db_xref="GeneID:78911"
                     /db_xref="MGI:MGI:1926161"
     exon            1..455
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             115..2286
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /codon_start=1
                     /product="tripartite motif-containing protein 42"
                     /protein_id="NP_084495.2"
                     /db_xref="CCDS:CCDS23422.1"
                     /db_xref="GeneID:78911"
                     /db_xref="MGI:MGI:1926161"
                     /translation="METAMCVCSPCCTWQRCCPRLFSCLCCKFIFTSERNCTCFPCPY
                     KDERNCQFCHCTCAENPNCHWCCCSWANDPNCKCCCTASTNLKCYYYESHCCRNVTIT
                     FRKGRLRSIVTSSKTALRVGSSDTQMDEPKTMPASSHLVSHLTCPMCNRLRLHSFMLP
                     CNHSLCEKCLRQLQKHAEVTENFFILICPMCSRSHCMPYSHQMHLPENYLRGRLTKRY
                     MQQHGYLKWRFDRSSGPILCQVCRTRRIAYKRCVTCRLNLCNDCLKAFHSDVAMQDHV
                     FVDTSAEDQDEKICIHHPSSRINEYCRSDNQLLCAFCKIAFHNGHDTVSLIDACSERS
                     AALFSAIAKFKAVRYEIDNDLMEFNILKSSFKADKEAKRKEVRNGFLKLRAILQEKEK
                     IIMEQIENLEVSRQKEIEKYVYITTMKVNEMDGLIAYSKEALKETGQVAFLQSAKILV
                     DQIEEGIQNTFRPDPQLRLHSLHCIPLDFAELSNAIHELFPTGPKKACSSGDSLPSQY
                     PIHSEMMIARKVTFSTHSFGNQQIYQRSSSLISFNTANDKGKMGLENYGRAQSAAPAK
                     TTDGLYTYWSATGETQPPQSSNSFHNWYSFNDTSVRTPGPIVIYQTLVYPRAAKVYWT
                     CPTEDVDSFEMEFYELVTTPPNNVRTELCGQIRDILQQNLELHNLTPNTEYLFKVRAI
                     NDNGPGQWSDICKVVTPDGRGKNRAKWGLLKNIQSALQKRF"
     exon            456..1153
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1974
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1975..2199
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2200..2463
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2437..2442
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2463
                     /gene="Trim42"
                     /gene_synonym="4930486B16Rik"
                     /note="major polyA site"
ORIGIN      
        1 aaactgccag cctcacgaga gtgggcaagg gtccctttgg gagagaagtg gccacaataa
       61 tctggtagag aacattgtca aaactctaga ggccttgtac cagaactagg agccatggag
      121 acggctatgt gtgtctgttc tccctgctgt acctggcaga gatgctgccc ccggctgttc
      181 tcctgcctgt gctgcaagtt catcttcacc tccgagcgga actgcacctg cttcccctgc
      241 ccctacaagg atgagcggaa ctgccagttc tgccactgca cctgtgcaga gaaccccaat
      301 tgccactggt gctgctgctc ctgggccaat gaccccaact gtaagtgctg ctgcacggcc
      361 agcaccaatc tgaagtgcta ctactacgag agccactgct gccgcaatgt taccatcaca
      421 ttcagaaagg gtcgccttcg aagcatcgtc acctcctcta agaccgccct ccgcgtgggg
      481 agcagcgata ctcagatgga tgaacccaag accatgcctg ccagcagcca cctggtgagc
      541 cacctcacct gccccatgtg caaccggctg cgcctgcact ccttcatgct gccctgcaac
      601 cacagcctat gcgagaagtg cctgcggcag ctgcaaaagc acgccgaggt cacggagaat
      661 ttcttcatcc tcatctgccc catgtgcagc cgctcgcact gtatgcccta cagccaccag
      721 atgcacctgc cagaaaacta cctgcgcggg cgccttacta aacgctacat gcagcagcac
      781 ggctacctca agtggcgctt cgaccgctcc tcagggccca tcctctgcca ggtgtgccgc
      841 acccggcgca ttgcctacaa gcgctgtgtc acctgtcgtc tcaacctgtg caacgactgt
      901 ctcaaggcct tccactcaga cgtggccatg caggaccacg tcttcgtgga caccagcgct
      961 gaggaccagg atgagaagat ttgcatccac catccatcca gccgcatcaa cgagtactgc
     1021 cgcagcgaca accagctact ctgcgctttc tgcaagatcg ctttccacaa tggccatgac
     1081 acggtcagcc tcatagacgc ctgctccgag aggtctgctg ccctcttcag tgccatcgcc
     1141 aagttcaaag cagtccgata tgaaattgat aatgacctga tggaattcaa cattctaaag
     1201 agcagtttta aagctgacaa ggaagcaaag aggaaggagg tccggaatgg tttcctcaaa
     1261 ctgcgagcca tccttcaaga gaaagaaaag atcatcatgg aacagataga gaatctggaa
     1321 gtgtccaggc agaaagaaat tgagaaatat gtgtacatta cgaccatgaa agtgaacgaa
     1381 atggatggcc tgattgctta ctccaaagaa gccctgaagg aaacaggaca ggtggccttc
     1441 ctgcagtctg ccaagatcct ggtagaccag attgaggagg gcatccagaa taccttcagg
     1501 cccgaccctc agctgcggct tcactcccta cactgtatcc ccttggattt tgctgaactc
     1561 tccaatgcca tccacgagct ctttcccacg ggacccaaaa aggcttgctc ctctggggac
     1621 tcactccctt cccagtatcc tatccactca gaaatgatga tcgccaggaa ggtgacattc
     1681 agcacccata gcttcggcaa ccagcagata taccagcgga gctcttcctt gatatccttc
     1741 aacaccgcca atgacaaggg caagatgggt ctggagaact acgggagagc ccagtctgcc
     1801 gcgcccgcca agacgactga cggcctttac acctactgga gtgccacagg ggaaacccag
     1861 cccccgcaga gcagtaacag cttccacaac tggtattcct tcaacgacac ctctgtgagg
     1921 accccaggcc caattgtcat ctaccagaca ctggtgtacc caagagctgc caaggtttac
     1981 tggacgtgcc caacagaaga cgtggactcc tttgagatgg aattctatga gctcgttacc
     2041 acccctccta ataatgtgcg cacagagctc tgtggacaaa ttcgcgacat cctgcagcag
     2101 aacctggagc tacacaacct gacccccaac actgagtatt tgttcaaggt tagagccatc
     2161 aatgataatg gtcccgggca gtggagtgac atctgcaagg tggtaacacc agatgggcgt
     2221 gggaagaacc gggctaagtg gggactcctg aagaacatcc agtctgccct ccagaagcgc
     2281 ttctgagcct tggaacccac ctcagaactc tactgctcat agagatatct atatgtgtat
     2341 gtatgtattt ttctcaccac attcctcgag gaggttgtag ggtagatgga tgtttccagt
     2401 acctctgggt tttccaaaag gagtttccta aaagccaata aaaggaaatg tctgacatca
     2461 taaaa
//
