LOCUS       NM_001243916            1535 bp    mRNA    linear   ROD 11-DEC-2024
DEFINITION  Mus musculus tripartite motif-containing 34B (Trim34b), mRNA.
ACCESSION   NM_001243916 XM_003084720 XM_003086795
VERSION     NM_001243916.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Schafer,A., Marzi,A., Furuyama,W., Catanzaro,N.J., Nguyen,C.,
            Haddock,E., Feldmann,F., Meade-White,K., Thomas,T., Hubbard,M.L.,
            Gully,K.L., Leist,S.R., Hock,P., Bell,T.A., De la Cruz,G.E.,
            Midkiff,B.R., Martinez,D.R., Shaw,G.D., Miller,D.R., Vernon,M.J.,
            Graham,R.L., Cowley,D.O., Montgomery,S.A., Schughart,K., de
            Villena,F.P.M., Wilkerson,G.K., Ferris,M.T., Feldmann,H. and
            Baric,R.S.
  TITLE     Mapping of susceptibility loci for Ebola virus pathogenesis in mice
  JOURNAL   Cell Rep 43 (5), 114127 (2024)
   PUBMED   38652660
REFERENCE   2  (bases 1 to 1535)
  AUTHORS   Tareen,S.U., Sawyer,S.L., Malik,H.S. and Emerman,M.
  TITLE     An expanded clade of rodent Trim5 genes
  JOURNAL   Virology 385 (2), 473-483 (2009)
   PUBMED   19147168
REFERENCE   3  (bases 1 to 1535)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   4  (bases 1 to 1535)
  AUTHORS   Reymond,A., Meroni,G., Fantozzi,A., Merla,G., Cairo,S., Luzi,L.,
            Riganelli,D., Zanaria,E., Messali,S., Cainarca,S., Guffanti,A.,
            Minucci,S., Pelicci,P.G. and Ballabio,A.
  TITLE     The tripartite motif family identifies cell compartments
  JOURNAL   EMBO J 20 (9), 2140-2151 (2001)
   PUBMED   11331580
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC142110.4.
            
            On or before Sep 2, 2011 this sequence version replaced
            XM_003086795.1, XM_003084720.1.
            
            Sequence Note: This RefSeq record was created from genomic sequence
            data to make the sequence consistent with the reference genome
            assembly. The genomic coordinates used for the transcript record
            were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC145515.1, SRR17253012.9770688.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164133, SAMN02415122
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-497               AC142110.4         78477-78973
            498-593             AC142110.4         79509-79604
            594-824             AC142110.4         80229-80459
            825-847             AC142110.4         83591-83613
            848-948             AC142110.4         84294-84394
            949-975             AC142110.4         84654-84680
            976-1535            AC142110.4         85064-85623
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 55.69 cM"
     gene            1..1535
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /note="tripartite motif-containing 34B"
                     /db_xref="GeneID:434218"
                     /db_xref="MGI:MGI:4821264"
     exon            1..497
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             78..1535
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif-containing protein 34B"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM34B"
                     /protein_id="NP_001230845.1"
                     /db_xref="CCDS:CCDS57570.1"
                     /db_xref="GeneID:434218"
                     /db_xref="MGI:MGI:4821264"
                     /translation="MASTGPTNIQEKTTCPVCQELLTKALSLGCGHLVCQACLISNKN
                     AVINPRGKSSCPVCGTRFSLENLQANKHLANVVERLGEVKLKPDIGTKRDLCVHHGEK
                     LLLFCKEDKKVICWVCERSQEHRGHHTFLWEEAVRECQENLQKALTRLRKEQEKVETL
                     EADIKEDRLSWKRQVQTERQRIQTGFNQLRRILDKEEQRELKRLREEEQMILDSLAGA
                     EAELAQQSQLVEELISDLELRREWSDTELLQDMSGILKWSQIWTLKKPKAVSKKLSMV
                     FQAPDLSGMLQKFRELSAVRAYWDNFTFNPENLNLNLILSEDHRQVTSVSIWPFKCCN
                     NGILGSKCFSSGKHYWEVDVSEKNAWTLGVYTRKRTLRFDVRQRKGQPNGYHRYKPQN
                     GYWVIGLQHGSKYSIFEDSSNCDPTVLNPFVATPLHRVGIFLDCEEGTVSFLNVTNHG
                     SLIYKFSQCCFSQPAYPYFNPWDCPAPMTLCPLNS"
     exon            498..593
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /inference="alignment:Splign:2.1.0"
     exon            594..824
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /inference="alignment:Splign:2.1.0"
     exon            825..847
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /inference="alignment:Splign:2.1.0"
     exon            848..948
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /inference="alignment:Splign:2.1.0"
     exon            949..975
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1535
                     /gene="Trim34b"
                     /gene_synonym="Gm15134; Trim34-2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctgcctagc catccagcag tccttaagaa agaagagcct cagagactag gacaggaaaa
       61 gacacagggg caacataatg gcctcaacag gcccgacgaa tatacaggag aagaccactt
      121 gccctgtctg ccaagagctt ttgaccaaag ccctgagtct aggctgtggc caccttgtat
      181 gccaagcctg tctcatctcg aacaagaatg cagtgatcaa ccccagaggg aaaagcagct
      241 gtcctgtgtg tggtactaga ttctcgttgg aaaatctaca ggctaataaa catctggcaa
      301 atgtagtaga gagactcggg gaggttaaat tgaagcctga cattgggaca aagagagatc
      361 tctgtgtaca ccatggagag aagctccttc tcttctgtaa ggaggacaag aaggtcattt
      421 gctgggtttg tgagcgttct caggagcatc gtggtcacca cacattcctc tgggaggaag
      481 cagtcaggga atgtcaggag aatctccaga aagctctcac gaggctgagg aaggagcagg
      541 agaaggtgga gacattggaa gctgacatca aagaagacag actttcctgg aagcgccagg
      601 tccagactga gagacaaagg attcaaacag gctttaatca gcttagaaga atcctggaca
      661 aggaggaaca gagagagctg aaaagactca gagaagagga gcagatgata ctggacagcc
      721 tggcgggggc agaggctgag ctggctcaac agagtcagtt ggtggaggaa cttatctcgg
      781 atctagagct gcggcgtgag tggtcagata cagagctgct gcaggatatg agcggtattt
      841 tgaaatggag tcagatctgg acactgaaga agccaaaagc agtttctaag aaactgagca
      901 tggtattcca agctcctgat ctgagtggca tgctacaaaa gttcagagag ctatcagctg
      961 tccgggccta ctgggacaac ttcacattta atccagaaaa cctaaatttg aatcttatac
     1021 tttcagaaga ccacagacaa gtgacatctg tgtccatttg gccctttaag tgttgtaata
     1081 atggtatttt gggctccaaa tgtttctcct caggaaaaca ttactgggaa gtggatgtgt
     1141 ctgaaaagaa tgcctggacc ctgggagttt acactagaaa acgaacttta aggtttgatg
     1201 ttagacaacg caaaggtcag ccaaatggtt accacagata caaaccacag aatggctact
     1261 gggttatagg gttacagcat ggatcgaagt atagtatctt tgaggattct tccaactgtg
     1321 accctactgt tctgaacccc tttgtggcca cccctctcca tcgggttggg attttccttg
     1381 actgtgaaga gggcacagtg tccttcctca atgtcaccaa ccatggatca ctcatttaca
     1441 agttctccca atgctgcttt tcccaacctg cctatccata cttcaatcct tgggactgtc
     1501 cagcccccat gaccctgtgt cctctgaact cctga
//
