LOCUS       NM_001357679            2597 bp    mRNA    linear   ROD 27-DEC-2022
DEFINITION  Mus musculus tripartite motif-containing 34A (Trim34a), transcript
            variant 2, mRNA.
ACCESSION   NM_001357679 XM_006508367
VERSION     NM_001357679.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Wang X, Xiong J, Zhou D, Zhang S, Wang L, Tian Q, Li C, Liu J, Wu
            Y, Li J and Wang J.
  TITLE     TRIM34 modulates influenza virus-activated programmed cell death by
            targeting Z-DNA-binding protein 1 for K63-linked polyubiquitination
  JOURNAL   J Biol Chem 298 (3), 101611 (2022)
   PUBMED   35065966
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Boon AC, deBeauchamp J, Hollmann A, Luke J, Kotb M, Rowe S,
            Finkelstein D, Neale G, Lu L, Williams RW and Webby RJ.
  TITLE     Host genetic variation affects resistance to infection with a
            highly pathogenic H5N1 influenza A virus in mice
  JOURNAL   J Virol 83 (20), 10417-10426 (2009)
   PUBMED   19706712
REFERENCE   3  (bases 1 to 2597)
  AUTHORS   Tareen SU, Sawyer SL, Malik HS and Emerman M.
  TITLE     An expanded clade of rodent Trim5 genes
  JOURNAL   Virology 385 (2), 473-483 (2009)
   PUBMED   19147168
REFERENCE   4  (bases 1 to 2597)
  AUTHORS   Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, Luzi L,
            Riganelli D, Zanaria E, Messali S, Cainarca S, Guffanti A, Minucci
            S, Pelicci PG and Ballabio A.
  TITLE     The tripartite motif family identifies cell compartments
  JOURNAL   EMBO J 20 (9), 2140-2151 (2001)
   PUBMED   11331580
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123830.5.
            
            [WARNING] On May 24, 2023 this sequence was replaced by
            NM_001357679.2.
            
            On Nov 4, 2017 this sequence version replaced XM_006508367.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK089187.1, SRR7345562.1238957.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               AC123830.5         25540-25689         c
            151-770             AC123830.5         21996-22615         c
            771-866             AC123830.5         21364-21459         c
            867-1097            AC123830.5         20521-20751         c
            1098-1120           AC123830.5         10711-10733         c
            1121-1221           AC123830.5         9928-10028          c
            1222-1248           AC123830.5         9642-9668           c
            1249-2597           AC123830.5         7907-9255           c
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7"
     gene            1..2597
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /note="tripartite motif-containing 34A"
                     /db_xref="GeneID:94094"
                     /db_xref="MGI:MGI:2137359"
     exon            1..150
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
     exon            151..770
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             351..1808
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif-containing protein 34; tripartite
                     motif-containing 34; tripartite motif protein 34;
                     tripartite motif-containing protein 34A"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM34A"
                     /protein_id="NP_001344608.1"
                     /db_xref="CCDS:CCDS52342.1"
                     /db_xref="GeneID:94094"
                     /db_xref="MGI:MGI:2137359"
                     /translation="MASTGLTNIQEKTTCPVCQELLTKALSLGCGHRVCQACLITKKN
                     AVINPREKSSCPVCGTRFSLENLQANKHLANVVERLGEVKLKPDIGTKRDLCVHHGEK
                     LLLFCKEDKKAICWVCERSQEHRGHHTFLWEEAVRECQENLQKALTRLRKEQEKVETL
                     EADIKEDRLSWKCQVQTERQRIQTGFNQLRRILDKEEQRELKRLREEEQMILDSLAGA
                     EAELAQQSQLVEELISDLELRREWSDTELLQDMSGILKWSQIWTLKKPKAVSKKLSMV
                     FQAPDLSGMLQKFRELTAVRAYWDNFTFNPENLNLNLILSEDHRQVTSVSIWPFKCCN
                     NGILGSKCFSSGKHYWEVDVSEKKAWTLGVYTRKRTLRFDVRQRKGQPNGYHRYKPQN
                     GYWVIGLQHGSKYSIFEDSSNCDPTVLNPFVATPLHRVGVFLDCEEGTVSFLNVTNHG
                     SLIYKFSQCCFSQPAYPYFNPWDCPAPMTLCPLNS"
     exon            771..866
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
     exon            867..1097
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1098..1120
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1221
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1248
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
     exon            1249..2597
                     /gene="Trim34a"
                     /gene_synonym="Trim34; Trim34-1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tggtttggag tttcagtttc ttttctctgc agtcaaaaag ggaggggctg ctggttggtt
       61 tggctggctg aaaccagtcc ctggcttttc ctcaccgctt ctgtctggag gaaagatctc
      121 cccttccagg tcggaggtga gggtccaaag attctgtcta gtaatgggtg aaaattgagt
      181 gctttcaacc atcatattat ctaccttgaa ggatacttag tggctgtgtt gtcctgagtt
      241 gccttggaga actgactcac cattgtttta gaatctgcct agccatccag cagtccttaa
      301 gaaagaagag cctcagagac taggacagga aaagacacag gggcaacata atggcctcaa
      361 caggtctgac gaatatacag gagaagacca cttgccctgt ctgccaagag cttttgacca
      421 aagccctgag tctaggctgt ggccaccgtg tatgccaagc ctgtctcatc acgaagaaga
      481 atgcagtgat caaccccaga gagaaaagca gctgtcctgt gtgtggtact agattctcgt
      541 tggaaaatct acaggctaat aaacatctgg caaatgtagt agagagactc ggggaggtta
      601 aattgaagcc tgacattggg acaaagagag atctctgtgt acaccatgga gagaagctcc
      661 ttctcttctg taaggaggac aagaaggcca tttgctgggt ttgtgagcgt tctcaggagc
      721 atcgtggtca ccacacattc ctctgggagg aagcagtcag ggaatgtcag gagaatctcc
      781 agaaagctct cacgaggctg aggaaggagc aggagaaggt ggagacattg gaagctgaca
      841 tcaaagaaga cagactttcc tggaagtgcc aggtccagac tgagagacaa aggattcaaa
      901 caggctttaa tcagcttaga agaatcctgg acaaggagga acagagagag ctgaaaagac
      961 tcagagaaga ggagcagatg atactggaca gcctggcggg ggcagaggct gagctggctc
     1021 aacagagtca gttggtggag gaacttatct cggatctaga gctgcggcgt gagtggtcag
     1081 atacagagtt gctgcaggat atgagcggta ttttgaaatg gagtcagatc tggacactga
     1141 agaagccaaa agcagtttct aagaaactga gcatggtatt ccaagctcct gatctgagtg
     1201 gcatgctaca aaagtttaga gagctaacag ctgtccgggc ctactgggac aacttcacat
     1261 ttaatccaga aaacctaaat ttgaatctta tactttcaga agaccacaga caagtgacat
     1321 ctgtgtccat ttggcccttt aagtgttgta ataacggtat cttgggctcc aaatgtttct
     1381 cctcaggaaa acattactgg gaagtggatg tgtctgaaaa gaaggcctgg accctgggag
     1441 tttacactag aaaacgaact ttaaggtttg atgttagaca acgcaaaggt cagccaaatg
     1501 gttaccacag atacaaacca cagaatggct actgggttat agggttacag catggatcga
     1561 agtatagtat ctttgaggat tcttccaact gtgaccctac tgttctgaac ccctttgtgg
     1621 ccacccctct ccatcgggtt ggggtttttc ttgactgtga agagggcaca gtatccttcc
     1681 tcaatgtcac caaccatgga tcactcattt acaagttctc ccaatgctgc ttttcccaac
     1741 ctgcctatcc atacttcaat ccttgggact gtccagcccc catgaccctg tgtcctctga
     1801 actcctgagt tttctcattc tcatccgttt ctgctcttac ttctggcctt gatgcttacc
     1861 ttgtgtatgg acctgtgctg ttcaggcatc tcttcccatg gtctcccttc tgtcatgctt
     1921 ggatgtggtg tatctggcat catgtagaag agatgcttac cttttactct agctcatttt
     1981 ctcaaaaaag cctaaagcta ggtcagggta atatccatgc cctctgcctt ccatatttcc
     2041 ctttgtcttg aagaaagttg acaaagtcta ttagccagta actcatcctt gttgtttaag
     2101 acaatccata agaactgact ccagaccaca actaatggat ttttaacact atgtcgctca
     2161 ggatacctta cattcaacaa gaagtcaagg aatagaaagt atgaacagca acacataatc
     2221 tagagttgag gttatgacta ctatataaat tcaaatgctg cctcttacaa actaataaat
     2281 tctaaggttc ttaaactgaa aattgaagtg catttgactt aagatggttg tatgaaacta
     2341 ggtatgtgta aatataaaat acccatttaa ctgtcttgta cataatacat gggcctatag
     2401 tcctttgtac tcaatgaaat attttgtgga atgtttggag tattataaat acctgttgtc
     2461 ttcaaatgct agtcgtcttc cttgcaagtt tgattccata tgtataatct catgtggagc
     2521 atgtctgatt tgaaaaaaaa agggggactg gtcttcactg ttgttctaaa ctattaaaat
     2581 tcatttgcag ctaaaaa
//
