LOCUS       NM_001378693            4605 bp    mRNA    linear   ROD 26-JUN-2024
DEFINITION  Mus musculus tripartite motif-containing 30C (Trim30c), transcript
            variant 2, mRNA.
ACCESSION   NM_001378693 XM_030243185
VERSION     NM_001378693.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4605)
  AUTHORS   Schafer,A., Marzi,A., Furuyama,W., Catanzaro,N.J., Nguyen,C.,
            Haddock,E., Feldmann,F., Meade-White,K., Thomas,T., Hubbard,M.L.,
            Gully,K.L., Leist,S.R., Hock,P., Bell,T.A., De la Cruz,G.E.,
            Midkiff,B.R., Martinez,D.R., Shaw,G.D., Miller,D.R., Vernon,M.J.,
            Graham,R.L., Cowley,D.O., Montgomery,S.A., Schughart,K., de
            Villena,F.P.M., Wilkerson,G.K., Ferris,M.T., Feldmann,H. and
            Baric,R.S.
  TITLE     Mapping of susceptibility loci for Ebola virus pathogenesis in mice
  JOURNAL   Cell Rep 43 (5), 114127 (2024)
   PUBMED   38652660
REFERENCE   2  (bases 1 to 4605)
  AUTHORS   Tareen,S.U., Sawyer,S.L., Malik,H.S. and Emerman,M.
  TITLE     An expanded clade of rodent Trim5 genes
  JOURNAL   Virology 385 (2), 473-483 (2009)
   PUBMED   19147168
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC142110.4.
            
            On Mar 4, 2020 this sequence version replaced XM_030243185.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164143
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                AC142110.4         149698-149784       c
            88-538              AC142110.4         139170-139620       c
            539-634             AC142110.4         137245-137340       c
            635-865             AC142110.4         136406-136636       c
            866-888             AC142110.4         132483-132505       c
            889-1001            AC142110.4         132238-132350       c
            1002-1028           AC142110.4         131946-131972       c
            1029-4605           AC142110.4         128123-131699       c
FEATURES             Location/Qualifiers
     source          1..4605
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 55.69 cM"
     gene            1..4605
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /note="tripartite motif-containing 30C"
                     /db_xref="GeneID:434219"
                     /db_xref="MGI:MGI:4821257"
     exon            1..87
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     exon            88..538
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             116..1657
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /note="tripartite motif-containing 30-2"
                     /codon_start=1
                     /product="Tripartite motif-containing protein 30A-like"
                     /protein_id="NP_001365622.1"
                     /db_xref="GeneID:434219"
                     /db_xref="MGI:MGI:4821257"
                     /translation="MMASSALAMAKEEVTCPICLELLKEPVSTDCGHSFCQTCIILNY
                     VSNRRMDGVGSCPVCRVGYLFENLRPNQNMINIVKRIKELKSIPEEKEKVFYCAQHGE
                     KLKLFCKEDRMAICWVCERSQKHRGHQTALIEEVDQEYKEKLQAALKKLMENEKRCDK
                     WQDDLQQQRADWENQIQRDVEYVQMELKGLRDLLDSKENEGLQELKKEKEEVMEKLEE
                     SENELREQTELVRDLISDVGHQLALSTMEMLQGMNSVLTRIQVLRLKQPQTIPPKRRR
                     TYQVQDQVQDLNVMLQAIQGLMYVRRYWVHVTLYANNHAVIAINKEKRQIQHTSYYKR
                     NLQISKTYNLGVLGYPAICSGKHYWEVDVSRKKTWILGLNDGLCVQPQLHSISEMGFK
                     VKYNSSVKQCGNYQHKYGYWVIGMKNWSVYNASDECSVTHNSSVLALSLSGPPSRVGV
                     FLDREACTLSFYDVSNFGALIYRFYEPFFPHTVYPYFNPMECSEPMTVCGPSSSISVE
                     TQSKE"
     exon            539..634
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     exon            635..865
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     exon            866..888
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1001
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1002..1028
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..4605
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2063..2068
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /note="hexamer: ATTATA"
     polyA_site      2084
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
     regulatory      4583..4588
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /note="hexamer: AATAAA"
     polyA_site      4605
                     /gene="Trim30c"
                     /gene_synonym="EG434219; Gm5598; Trim30-2"
                     /note="major polyA site"
ORIGIN      
        1 gtcatttggt tggtgtttga aggtgtgaga acaatattag actgcagagt tgggaggaat
       61 ttagaagaaa gcactgtctc tgctttggga cctagaaaga cacagaatca cagcaatgat
      121 ggcctcctca gctctggcaa tggcaaagga agaggtgacc tgtccaatct gtctggagct
      181 tctgaaggaa cctgtgagca ctgattgtgg tcacagcttc tgccaaacct gtatcatact
      241 gaactatgtg tccaacagaa gaatggatgg ggtaggcagc tgccctgtgt gccgggttgg
      301 ttacctgttt gagaatctga gacctaatca aaacatgatc aacatagtaa aaaggatcaa
      361 agagttgaag tctatcccag aggagaagga gaaagtgttt tactgtgcac aacatggaga
      421 gaaactcaag ctcttctgta aggaggacag gatggccatc tgctgggttt gtgagagatc
      481 tcagaagcac cgtggtcacc agacagctct cattgaagag gtggaccagg agtacaagga
      541 gaagctgcag gcagctctga agaagctgat ggaaaatgaa aaaagatgtg ataaatggca
      601 ggatgacctt cagcaacaga gagctgactg ggagaatcaa atacagcgtg atgtggaata
      661 tgttcagatg gagcttaaag gactaagaga cctcctggac tccaaggaga atgaggggct
      721 gcaggagctg aagaaagaga aggaagaggt tatggaaaag ctggaagagt ctgaaaatga
      781 gctaagggag cagacagagt tggtgagaga cctcatctca gatgtgggac atcagttggc
      841 gctctcaacc atggaaatgc tgcagggcat gaattctgtt ctaacaagga ttcaggtcct
      901 gagactgaaa cagcctcaaa ctatcccccc aaaaagaaga agaacatacc aagttcagga
      961 tcaagttcag gatctgaatg tcatgctgca agcaattcaa gggctcatgt atgtccgacg
     1021 atattgggtt catgtgactc tctatgcaaa caaccatgca gtaattgcca ttaacaaaga
     1081 aaaaagacaa atacaacata caagttacta taaaaggaat ctgcaaattt ctaagaccta
     1141 taacttgggt gtcctgggat atccagctat ctgctcaggg aaacattact gggaagtaga
     1201 cgtgtctaga aaaaagacct ggatcctggg attaaatgat ggactgtgtg ttcaacctca
     1261 acttcattct ataagtgaaa tgggcttcaa agtcaaatat aattctagtg tgaaacaatg
     1321 tggtaattat cagcataaat atggctactg ggttataggg atgaagaatt ggtctgtata
     1381 caatgcctct gatgagtgtt ctgttaccca caattccagt gttttggccc tctctctgtc
     1441 tggtcctccc agtcgtgttg gagttttcct ggaccgggaa gcttgtactc tctcatttta
     1501 tgatgtttct aactttggag ctctcatcta taggttctat gaacctttct tccctcatac
     1561 agtctatcca tattttaatc ctatggaatg ttcagagcca atgacagtat gtgggccatc
     1621 ctcatcaatc tctgtggaaa cacagtcaaa agaatgaccc atggcaaaca ttgccttggg
     1681 acctgtgaga gcgaccacag aaaataagct ggagggcctt ttgcctcaag gacattttgt
     1741 tccttagatt gttcttggaa atgatttttt atttcctgca accagcattt gcattcagcc
     1801 tataagatac gtttactctt gttgaatgtt agaacatagc tatagaatcc atttctgtga
     1861 gagtatatgc tgagtgctag cctcaatata tgctgattct agacatggcc ttgtgccttg
     1921 atttctggct ttcccagtta taatctatag tatagtgtag accatcatgt ttaaatttgt
     1981 ctgtcctaag aaagttgtgg gaaagggtta ctctgttaat atttagtata tgcttactgg
     2041 catttattta catgttttta taattatatt attctgaact caaacaatct tccttaaagt
     2101 gttgctttct tttttacatt catgtctaaa aacacagtga aactgaagtg aagttgactg
     2161 tagcattaga gtgtaggcct caccaccacc ctcatttatt aaggtcttca aatctcaggt
     2221 cttgcagaga gatctgccaa ggtgggcaaa ggtctacacc tcttcctttt gtggtactag
     2281 agatggaagc tatgaccttc tacattctga gaagaggctc caccagagag cttcttgcct
     2341 cagagctgtc aggtctccat aacccaattc tttctgtcac tgacaaaaga tgaaagaaag
     2401 ttcttcttca acttgtctag cactttagaa aattaaatat gagtctctca ctaaggaatg
     2461 ggtcttagca gaaggtcagt ttaaccacaa tgctcgtgtt tcatcaaaga gttaagaagg
     2521 aacctcccaa ataacatcca ctaagaccag gtgtttagag tatccaggtt ctaatcctgc
     2581 ctctccacat agcagtgtaa ccctgaataa catcctctaa agcctatgtt tgcttgggtt
     2641 tatctttttt gtctcatttt tgagtgtgtg tgtgtgttac aattttggta taaatggtga
     2701 ctctatattg tacatcattg tagtaaaata aatttgggat cttcagaaga ctccaagaaa
     2761 aagaaccctt tcttccaaga gtgacaatct gagttctttt actcagtcct agaagttggc
     2821 agccaactct aatagagtat tctcatcctc cacacacatg cagtaggaca cataggctaa
     2881 aacacctaga caaatacaaa atgaattgtg agatttttag taagagaaga agtacaatgt
     2941 gtataatgca tccactgctc actcagcaaa tggtagttgt gctaattact gggaagacat
     3001 gctgtactag tgttgcatgc agcagtggac aaatgggtga actaagactt ggctctcctc
     3061 atgtgttgct attagatcct gtaaactgtc atcagggctc ctcaaacatg ttataaatat
     3121 ctattaatat tttggggttt tacatttatt ttctgagaga cttttttagc tacatttgtt
     3181 aacatgtaag tgaaattcaa tgattatgca ttttttaatt aatcatttta tgtatttaca
     3241 ctccaaatat tgtttcccct cctggtcccc catcccagtg tgtttcaccc catgccattt
     3301 ctcctttgct gctgagggag aggaccccaa cacactttcc tactcccatc ctaccaacac
     3361 cacatctggt atattcctaa catagagcat caagtctcta caggattaag catgttctct
     3421 tctattgagg ccaaacaagg cagtcctctg ctatttatga tgtgccatgg ccacagacca
     3481 gctcctgtat gctctttggt tggtagctta gtctctggga actcttcggg gtcagggata
     3541 gttgaaactg ttggtcttcc tatgggatag ccatcccctc tagctccttc agtccttccc
     3601 ctatctctct tttttttttt tcaacttggc actggacatt ttgtttgttt gtttgtttgt
     3661 ttttaagttt agagaaagaa ttgtattaaa gttttgaaaa actatgtttg gtatacattt
     3721 ccccaaactt ttgccctgca gattttcttt ttttcttttt tttctttttt tttttttaat
     3781 taggtatttt cctcatttac atccccgacc tcagtccaat ggttgactgt aaggatatgg
     3841 gttcatctca gtcagctgat gtagagtctc ttagaggaca gccatactag gatcctatct
     3901 gcaagcacaa catggcatca gtaatagtgt cagcattttg tgcctgagca tgcgatagac
     3961 cccaagttgg gccggtcact gaatggcctt tccttttttc tatgcttcat ttttgtcctt
     4021 gcatttcttt tagacaggaa caattttggc tcaaaagttt tgaaggcccc catgactcca
     4081 ctgggggccc agtctatcta ctggagatgg tctcttcagg tttcatctct ccactgttgg
     4141 gcattttcaa aatttccttc ctttgtcatg gggtctcccc cattgagtcc taggagcctt
     4201 ttacattcca ggtttctaga gctttctaga gctttttccc tcagccacca ccccaagcag
     4261 atgcatattt ctattaattc tcctggcaca ccaagcttct ctgctgtctt ccccatacct
     4321 ggttctgtac ccctttcccc tccccctttc ctcttccacc caggtccctc cctctcactg
     4381 cctcctatga ttattttgtc ccccccttca aagtgagatt tacagtcatt gataatgatg
     4441 acaatgatac caataatcct tacccttggt tgcactgtga aatataaaca atagaatgtc
     4501 ttggaactta cattgtttct gccatgtaaa tggtatctga tatggtatct ggtaagtttt
     4561 gtctctcttt tgatgtggcg ataataaagt attattcaga tctgc
//
