LOCUS       NM_175648               2771 bp    mRNA    linear   ROD 26-JUN-2024
DEFINITION  Mus musculus tripartite motif-containing 30B (Trim30b), mRNA.
ACCESSION   NM_175648 XM_909984 XM_921508
VERSION     NM_175648.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2771)
  AUTHORS   Schafer,A., Marzi,A., Furuyama,W., Catanzaro,N.J., Nguyen,C.,
            Haddock,E., Feldmann,F., Meade-White,K., Thomas,T., Hubbard,M.L.,
            Gully,K.L., Leist,S.R., Hock,P., Bell,T.A., De la Cruz,G.E.,
            Midkiff,B.R., Martinez,D.R., Shaw,G.D., Miller,D.R., Vernon,M.J.,
            Graham,R.L., Cowley,D.O., Montgomery,S.A., Schughart,K., de
            Villena,F.P.M., Wilkerson,G.K., Ferris,M.T., Feldmann,H. and
            Baric,R.S.
  TITLE     Mapping of susceptibility loci for Ebola virus pathogenesis in mice
  JOURNAL   Cell Rep 43 (5), 114127 (2024)
   PUBMED   38652660
REFERENCE   2  (bases 1 to 2771)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 2771)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 2771)
  AUTHORS   Boon,A.C., deBeauchamp,J., Hollmann,A., Luke,J., Kotb,M., Rowe,S.,
            Finkelstein,D., Neale,G., Lu,L., Williams,R.W. and Webby,R.J.
  TITLE     Host genetic variation affects resistance to infection with a
            highly pathogenic H5N1 influenza A virus in mice
  JOURNAL   J Virol 83 (20), 10417-10426 (2009)
   PUBMED   19706712
REFERENCE   5  (bases 1 to 2771)
  AUTHORS   Tareen,S.U., Sawyer,S.L., Malik,H.S. and Emerman,M.
  TITLE     An expanded clade of rodent Trim5 genes
  JOURNAL   Virology 385 (2), 473-483 (2009)
   PUBMED   19147168
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK041488.1.
            
            On or before Dec 7, 2005 this sequence version replaced
            XM_909984.1, XM_921508.1, NM_175648.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK041488.1, BB638164.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2771
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 55.69 cM"
     gene            1..2771
                     /gene="Trim30b"
                     /gene_synonym="A530023O14Rik; Trim30-1"
                     /note="tripartite motif-containing 30B"
                     /db_xref="GeneID:244183"
                     /db_xref="MGI:MGI:4821256"
     exon            1..187
                     /gene="Trim30b"
                     /gene_synonym="A530023O14Rik; Trim30-1"
                     /inference="alignment:Splign:2.1.0"
     exon            188..2771
                     /gene="Trim30b"
                     /gene_synonym="A530023O14Rik; Trim30-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             522..1001
                     /gene="Trim30b"
                     /gene_synonym="A530023O14Rik; Trim30-1"
                     /codon_start=1
                     /product="tripartite motif-containing 30B"
                     /protein_id="NP_783579.1"
                     /db_xref="CCDS:CCDS52345.1"
                     /db_xref="GeneID:244183"
                     /db_xref="MGI:MGI:4821256"
                     /translation="MQHANSYRRNLQISEIYHFVVLGYPTIGTGEQYLEVDMSRSDAW
                     LLGLNHGPHAAPQLCSMNEMFPNVKFHDTDIQHETYQSKYGYWIIGMKYRSVYAFDKC
                     PVTYNSVSWPSLCLVLSVMLEFSCPGKLGLSHFMMFLPMKLSSIGSMTLPSLIRSIF"
     regulatory      1428..1433
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trim30b"
                     /gene_synonym="A530023O14Rik; Trim30-1"
                     /note="hexamer: AATAAA"
     polyA_site      1456
                     /gene="Trim30b"
                     /gene_synonym="A530023O14Rik; Trim30-1"
                     /note="major polyA site"
ORIGIN      
        1 gactttcagg atagcatttg aaatgtaaat gaagaaaata tctagttaaa aaaaatttta
       61 aaggtcagat gtggaggtga atattttatc cctaggagtc agaccttgag actgaaacag
      121 ccccaaatga tcccgaaaaa aacataccaa cctccagatc tgaacagcat gctacaatca
      181 tttcaagggc tcatgatgtc cagtgatact ggggtaagga gaaaccacag caccatgaag
      241 ccctctcctc tcaatgtctt ccagagttta tttctctgtt aagtctctgg tttcacgttg
      301 cttctcccac tctgcacagc aatctgcctc tgcttgattt aaacacggct tctccgtgtt
      361 tcttctctct ttctcattta gcttctgttc cttaagttac aaataaggtt atgctttgtc
      421 tttcatgtga cttttaacta atgtgtctca tttttctgca gttcatgtga ctctacatca
      481 aaaaaaggca aacattgtca ttaacaaaga gaaaaagaca aatgcagcat gcaaattcct
      541 atagaaggaa tttgcaaatt tctgagatct atcattttgt tgtcctggga tatccaacta
      601 ttggcacagg ggaacaatac ctggaagtag acatgtctag aagtgatgcc tggctcctgg
      661 gattaaatca tggaccacat gctgcacccc aactttgttc tatgaatgaa atgttcccta
      721 atgtcaaatt tcatgatact gatatacagc atgaaactta tcagtctaaa tatggctact
      781 ggattatagg gatgaagtat aggtctgtat atgcctttga taagtgtcct gtcacctaca
      841 attcagtgtc ttggccctct ctctgtctgg tcctctcagt catgttggag ttttcctgtc
      901 ctgggaagct aggactctct cattttatga tgtttctacc tatgaagctt tcatctattg
      961 gttctatgac ccttccttcc ctgatacggt caatatttta atattgatat ttaatatttt
     1021 aatatttaat attttaatcc tattgaatgt tcaatgccaa tgacagtatg cgtaccaccc
     1081 tcttaaatcc tcacgtatat ctatacagtg ccctatgtct ggtgtagctc atgtgcctga
     1141 gctccagtgt catttctact tttcctggtt ttggtccttc cattttcatg actttccttt
     1201 cctttctaaa tacaaaccac tatagactca tttccttgat ccaattcttt ctctgtttac
     1261 agtgcaataa taattcatcc ttttccatac tcccgaagaa acagctgttt cacctttaga
     1321 agaagtagca cctctgatcc acccaccact gttggaacac aatcaaaaga atgccacatg
     1381 attgtgaaca atgccttgga gacctgtgac agtggcccca gaaggggaat aaaggcagag
     1441 ggacttttac ctcaaatgga ttctgttccc tggattgttc ttggatgtga tttcatgcct
     1501 gttgggagaa aaattctcat tcaatttgta agagttgctt attctttttg gatgtcggaa
     1561 tatagctaca gatccattct ggtgaaagca tatgctgagt atttgccaca atgtatcctg
     1621 aatctgaata tggccttgac ccttgctttc atgatttacc agatatagct tatagtaaat
     1681 ttcagccaat tgtgtctaaa tttttctgcc ttgagaaagt tccaggaagg gctgctctgt
     1741 taatatttag tatatactta ctagcacata tttacatata tttctaaact caaataacct
     1801 ttcctaaatt gtagttttct ttgtatactc gtatataaaa gtactgaagt acagtctgca
     1861 gcattagatt atattctgcc ccattctttc aagtcttcaa accccagttc tttttgatag
     1921 atctacctgg tttgtggttc cagagacaga attcaggtct tcatgcatgc tgagaaggtg
     1981 ccccatcatg gagctttctg ccccaactct gtcaggtctc cacaggccca ttctttctgt
     2041 cactcataaa agataaacga aagttcttct gcagcttgcc tagtggtttt gaaaattatg
     2101 tgtacgagca tctcgctaag gaatgggcct tagcagaagg tcattttagc ggcaatgctt
     2161 gcgcctcatc aaatagttaa gaaggaaata tttcaaatgg taccaaataa gactcctttg
     2221 taagcttaga tttttcaaac ccactttaat aagggttcta aggtgcttta acctcccctc
     2281 tagtccatca cccaccagac cgtgaaaagg aaaggttaat agagcacagg aggatgtgga
     2341 cctgtttaga aatacttctt tgaggtgaat ctgtctgcac tgtcaggata tcagccgttc
     2401 agatcacaga agtcaacagt ggtagctcag tctgcttgca aacaccattg cgaatcagca
     2461 atggctgttc attccagaag aaacagtgag gctctgccaa tcaccctaag accaacaaag
     2521 accagtaaag accaccaaag aacagcaaag aacagctgtg tctgtgaaaa atgcaagaga
     2581 gagcacttac agggcagcaa gtagaatcca gatgtggcat cacaccctgg cagaggatgc
     2641 agcagcccat tcaaaactgt ggccatgctt tggttgaaga atgagaatac ctggagtata
     2701 aactcacaag tgtttttact tttatcaaat tataaatcta catttatact taagataaaa
     2761 atgttcaaat t
//
