LOCUS       NM_030057               1283 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus trafficking protein particle complex 6B (Trappc6b),
            transcript variant 1, mRNA.
ACCESSION   NM_030057 XM_127025
VERSION     NM_030057.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Kim,J.J., Lipatova,Z. and Segev,N.
  TITLE     TRAPP Complexes in Secretion and Autophagy
  JOURNAL   Front Cell Dev Biol 4, 20 (2016)
   PUBMED   27066478
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
REFERENCE   3  (bases 1 to 1283)
  AUTHORS   Hughes,D.S., Keynes,R.J. and Tannahill,D.
  TITLE     Extensive molecular differences between anterior- and
            posterior-half-sclerotomes underlie somite polarity and spinal
            nerve segmentation
  JOURNAL   BMC Dev Biol 9, 30 (2009)
   PUBMED   19463158
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1283)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DV660612.1, AK020026.1 and CO039101.1.
            
            On Apr 16, 2015 this sequence version replaced NM_030057.2.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK046610.1, BC031464.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                DV660612.1         16-83
            69-1076             AK020026.1         38-1045
            1077-1283           CO039101.1         1-207               c
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 25.99 cM"
     gene            1..1283
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /note="trafficking protein particle complex 6B"
                     /db_xref="GeneID:78232"
                     /db_xref="MGI:MGI:1925482"
     exon            1..317
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             237..713
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     trafficking protein particle complex subunit 6B; TRAPP
                     complex subunit 6B"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 6B
                     isoform 1"
                     /protein_id="NP_084333.1"
                     /db_xref="CCDS:CCDS25932.1"
                     /db_xref="GeneID:78232"
                     /db_xref="MGI:MGI:1925482"
                     /translation="MADEALFLLLHNEMVSGVYKSAEQGEVENGRCVTKLESMGFRVG
                     QGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLL
                     IQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL"
     exon            318..385
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            386..503
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            504..587
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            588..681
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            682..1266
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1207..1212
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /note="hexamer: AATACA"
     polyA_site      1228
                     /gene="Trappc6b"
                     /gene_synonym="5830498C14Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggaagtggct caggctccac gcccagcgct atagtcttgg cagagtgtgg ggctgtcaca
       61 gggtctctag ggcccagtgg cggcggcccc ggggaggggc gcggtccacg gcggccttcc
      121 gcggccttag gacccgggta ggccgctgag cacggcgtgc ggtgggcgcg gggtaacggg
      181 aacctcgagt cccgcactga tcggagccga ctcggcgctg gagggatcgg cgggaaatgg
      241 cggacgaggc gttgtttttg cttctccata acgagatggt gtccggagtg tacaagtccg
      301 ccgagcaggg ggaagtggaa aatggaaggt gtgttactaa gctggagagc atggggttcc
      361 gagtggggca aggactgata gaaaggttta cgaaagatac tgcaaggttc aaggatgaat
      421 tagacatcat gaagttcatc tgtaaagatt tttggactac agtattcaag aaacagattg
      481 acaatctgag gacaaatcat cagggcatat atgtacttca ggacaacaaa tttcgactac
      541 tcattcagct gtctgcagga aaacagtatt tagaacatgc gtccaagtat ctagcattca
      601 catgtggctt aatcagaggt ggtttgtcga acttgggaat aaaaagtatt gtaacagctg
      661 aagtctcttc aatgcctgcc tgcaaatttc aggtgatgat acagaagctg tagagcgagc
      721 tggcgactcc tgggcagagc gttgcacatc ctgatttcac ctcatcgttg gttatctgcg
      781 ttggagcaaa tcgttatctc accagagtca catagaccaa atcaaagtag acacaggtcc
      841 tttgaccatg acagaaactg actgacctat tcagtgattt cagagaacta gacaccaaga
      901 tgcaaggctc ttcattttaa acatctttat ttccataggt gattagcatt taaccatcaa
      961 taggaagtga aactcagggt gtgttgaatt gctgtattaa aaaaaatgca ccaatcagaa
     1021 tagtttgtgt tcaaatgacc aaaatttgtt gaactataaa tctgttttag ttatttaaaa
     1081 aagcaaacca ctatgttaaa ttaagcttaa tttttattgt attgcttata atttatttct
     1141 gtcgagagaa ttcatatgct tatgtaagga tatcatttat acattgtgta tatatgtgta
     1201 tatataaata catgcattac tgtctaaatt acttgaaagt ttattttaat agacttgagt
     1261 ccttgaaaaa aaaaaaaaaa aaa
//
