LOCUS       NM_001162937            1208 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus trafficking protein particle complex 3 like
            (Trappc3l), mRNA.
ACCESSION   NM_001162937
VERSION     NM_001162937.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1208)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC099502.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099502.1, SRR13861905.145916.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN01164132 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1208              BC099502.1         1-1208
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 18.85 cM"
     gene            1..1208
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /note="trafficking protein particle complex 3 like"
                     /db_xref="GeneID:692132"
                     /db_xref="MGI:MGI:3642034"
     exon            1..92
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /inference="alignment:Splign:2.1.0"
     exon            93..276
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /inference="alignment:Splign:2.1.0"
     CDS             235..780
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /note="BET3-like protein; TRAPPC3-like protein; BET3 like"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit
                     3-like protein"
                     /protein_id="NP_001156409.1"
                     /db_xref="CCDS:CCDS48535.1"
                     /db_xref="GeneID:692132"
                     /db_xref="MGI:MGI:3642034"
                     /translation="MSRPAHKRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNKYL
                     DKMGYNIGTRLVEDFLARSCVRRCHSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNE
                     FSLILHKNPLAEFVEELPAGRSALCYCNLLCGIIRGALEMVHLAANVTFLQDRLKGDS
                     VTEIGITFLKKLDEKKYRRKK"
     exon            277..374
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /inference="alignment:Splign:2.1.0"
     exon            375..474
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /inference="alignment:Splign:2.1.0"
     exon            475..660
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /inference="alignment:Splign:2.1.0"
     exon            661..819
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /inference="alignment:Splign:2.1.0"
     exon            820..1185
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1149..1154
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /note="hexamer: AATAAA"
     polyA_site      1180
                     /gene="Trappc3l"
                     /gene_synonym="Bet3l"
                     /note="major polyA site"
ORIGIN      
        1 ggagcagaca aaggagaagt cagcgagtct atctctgcca agccacagaa attgatgtgc
       61 cagccaaaag aacttggcag caaaaataca agcaaagagc aaaggcagta gagcgcactc
      121 ctgcatcaaa gcaaggaaga gtttgctaag acagagatgg gagaggacta ctgatgttta
      181 tctaagtcac agacagaaga aaagaaccga agatctcttc atctaccagg agagatgtct
      241 cgtcctgcgc acaaaaggcc agaatatcac aaaataaaca aagacctttt tgtgctcacc
      301 tatggagctc tggttgccca gctatgcaag gattatgaaa aagatgaaga tgtgaacaaa
      361 tacttagata aaatgggtta caacattgga acacggctgg tggaagactt tttggctcga
      421 tcctgtgtga gaagatgtca tagttattca gaaattatca acataatcgc ccaggttgct
      481 tttaagatgt acttgggaat tacaccaagt gtgacctgcc acaattcaag cagaaatgaa
      541 ttttccctga ttctacacaa gaatcctctg gcagagttcg tcgaagagct gcctgctggg
      601 cgatctgcac tgtgctactg caatttgctc tgtgggatca tcagaggggc cctggagatg
      661 gttcatttgg ctgctaatgt tacattcttg caagacagac taaaaggcga cagtgtgaca
      721 gaaatcggaa taacatttct gaaaaagctg gatgagaaaa aatatagacg gaaaaaatga
      781 aaactagcat gcagagagcc actggtggtt ggctgtccag agcgttgttt gtaatagcca
      841 aaatgtgaat gaagtcagtc caagtggcca tcaacagatg agcattaaaa gtgtatatat
      901 atatatatat ggacttatct acaaggacct tttgctcaac atgaaagaaa agggattctg
      961 gcacatgcta gtacatggat gaaccctgag gaccttagaa gaagatgcgc cccagaaatg
     1021 tccacagcac tgtgaatgaa cttatgccta ttgaaatgca ttcttaaaga tggtgaagag
     1081 tataaatatt atgttataga aattttacca caatgtaaaa atttaaaagt aatgtgttat
     1141 gtatccacaa taaagagttg gctaaataaa caagaagaca tttaaaaaaa aaaaaaaaaa
     1201 aaaaaaaa
//
