LOCUS       NM_013718               1315 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus trafficking protein particle complex 3 (Trappc3),
            mRNA.
ACCESSION   NM_013718 XM_990561
VERSION     NM_013718.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1315)
  AUTHORS   Hu,M., Bodnar,B., Zhang,Y., Xie,F., Li,F., Li,S., Zhao,J., Zhao,R.,
            Gedupoori,N., Mo,Y., Lin,L., Li,X., Meng,W., Yang,X., Wang,H.,
            Barbe,M.F., Srinivasan,S., Bethea,J.R., Mo,X., Xu,H. and Hu,W.
  TITLE     Defective neurite elongation and branching in Nibp/Trappc9
            deficient zebrafish and mice
  JOURNAL   Int J Biol Sci 19 (10), 3226-3248 (2023)
   PUBMED   37416774
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1315)
  AUTHORS   Kim,J.J., Lipatova,Z. and Segev,N.
  TITLE     TRAPP Complexes in Secretion and Autophagy
  JOURNAL   Front Cell Dev Biol 4, 20 (2016)
   PUBMED   27066478
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1315)
  AUTHORS   Menon,S., Cai,H., Lu,H., Dong,G., Cai,Y., Reinisch,K. and
            Ferro-Novick,S.
  TITLE     mBET3 is required for the organization of the TRAPP complexes
  JOURNAL   Biochem Biophys Res Commun 350 (3), 669-677 (2006)
   PUBMED   17027922
  REMARK    GeneRIF: Together our findings indicate that BET3 plays an
            important role in the organization of the TRAPP complexes in both
            mammalian cells and yeast.
REFERENCE   4  (bases 1 to 1315)
  AUTHORS   Kim,Y.G., Raunser,S., Munger,C., Wagner,J., Song,Y.L., Cygler,M.,
            Walz,T., Oh,B.H. and Sacher,M.
  TITLE     The architecture of the multisubunit TRAPP I complex suggests a
            model for vesicle tethering
  JOURNAL   Cell 127 (4), 817-830 (2006)
   PUBMED   17110339
REFERENCE   5  (bases 1 to 1315)
  AUTHORS   Loh,E., Peter,F., Subramaniam,V.N. and Hong,W.
  TITLE     Mammalian Bet3 functions as a cytosolic factor participating in
            transport from the ER to the Golgi apparatus
  JOURNAL   J Cell Sci 118 (Pt 6), 1209-1222 (2005)
   PUBMED   15728249
REFERENCE   6  (bases 1 to 1315)
  AUTHORS   Kim,Y.G., Sohn,E.J., Seo,J., Lee,K.J., Lee,H.S., Hwang,I.,
            Whiteway,M., Sacher,M. and Oh,B.H.
  TITLE     Crystal structure of bet3 reveals a novel mechanism for Golgi
            localization of tethering factor TRAPP
  JOURNAL   Nat Struct Mol Biol 12 (1), 38-45 (2005)
   PUBMED   15608655
  REMARK    GeneRIF: the crystal structure of mouse Bet3p (bet3), a conserved
            TRAPP component, reveals a dimeric structure with hydrophobic
            channels
REFERENCE   7  (bases 1 to 1315)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC003736.1.
            
            On or before May 4, 2006 this sequence version replaced
            XM_990561.1, NM_013718.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC003736.1, AK151747.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1315
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 60.23 cM"
     gene            1..1315
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /note="trafficking protein particle complex 3"
                     /db_xref="GeneID:27096"
                     /db_xref="MGI:MGI:1351486"
     exon            1..133
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..634
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /note="Bet3 homolog"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 3"
                     /protein_id="NP_038746.1"
                     /db_xref="CCDS:CCDS18647.1"
                     /db_xref="GeneID:27096"
                     /db_xref="MGI:MGI:1351486"
                     /translation="MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQL
                     DRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDE
                     FSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGV
                     TEIRMRFIRRIEDNLPAGEE"
     exon            134..231
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /inference="alignment:Splign:2.1.0"
     exon            232..331
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /inference="alignment:Splign:2.1.0"
     exon            332..514
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /inference="alignment:Splign:2.1.0"
     exon            515..1256
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1227..1232
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /note="hexamer: AATAAA"
     polyA_site      1256
                     /gene="Trappc3"
                     /gene_synonym="1110058K12Rik; Bet3"
                     /note="major polyA site"
ORIGIN      
        1 ggggccgcgg ctgggttgaa tcggcgactc ccggggtctg ggatctgggt tgtgaggagg
       61 tgaggtgagg cggcactgaa cggtgggcac catgtcgagg caggcgaacc gtggcacgga
      121 gagcaagaaa atgagttctg agctgttcac gctgacctat ggagcgcttg tcacccagct
      181 gtgcaaggac tatgaaaacg acgaagacgt gaacaagcag ctggacagaa tgggctacaa
      241 cattggagtc cgactgattg aagatttttt ggcacggtca aatgttggaa gatgtcatga
      301 ctttcgggaa actgcagatg ttattgctaa ggtggcgttc aagatgtacc tgggcatcac
      361 tccaagcatc accaactgga gcccagccgg agatgaattc tccctcatcc tggaaaacaa
      421 ccctctggtg gactttgtgg agcttcccga taaccactcg gccctcattt actccaacct
      481 cctgtgtggg gtgttgcggg gagccctgga gatggtccag atggctgtgg aggccaagtt
      541 tgtccaggac actctgaagg gagatggcgt gacagaaatc aggatgaggt tcatcaggcg
      601 gattgaagac aacctcccag ctggagaaga gtaagcatct ctaggacttg ggcagccaag
      661 aggatgcctg ctgggatgag agaggcaggc gctcgcttcc tctgcccctg gaactcagtg
      721 acttttaaac tgatgttata tattcttcta accttatttc catcctccat gctaatagag
      781 agcagactga tagtctgttt gccccacaaa tatgcacctc agaagggggt tctttgctcc
      841 atttcccttc agaagggcag gatgtacttg cccttggttg gactaagaga gctcaaacca
      901 ttttacattc ctgtgaattt tccaaagcaa agcccacttt gaccccatta agggacgagc
      961 ctgatgcatc tgttcctgcg acttcatgac gccattggca aatggctgta gggaatcttg
     1021 ggttgtggag gggagggaga acgctgggaa ggggtgggta agaattgttg gctgtagtga
     1081 cactgtagtc tgccaggcca cggaagccag tcctgccgga aacaccggct tctgggaagc
     1141 cgcccaggtc tcattcctcc ctgctgtttg gaggcaacat ctcctctttt tacggagggt
     1201 ccatcctttt ttcttacaaa ttcttcaata aagacacatt cttgagtgaa gcccaaaaaa
     1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//
