LOCUS       NM_021502                634 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus trafficking protein particle complex 2L (Trappc2l),
            mRNA.
ACCESSION   NM_021502
VERSION     NM_021502.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Kim,J.J., Lipatova,Z. and Segev,N.
  TITLE     TRAPP Complexes in Secretion and Autophagy
  JOURNAL   Front Cell Dev Biol 4, 20 (2016)
   PUBMED   27066478
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 634)
  AUTHORS   Van Dyck,F., Braem,C.V., Chen,Z., Declercq,J., Deckers,R.,
            Kim,B.M., Ito,S., Wu,M.K., Cohen,D.E., Dewerchin,M., Derua,R.,
            Waelkens,E., Fiette,L., Roebroek,A., Schuit,F., Van de Ven,W.J. and
            Shivdasani,R.A.
  TITLE     Loss of the PlagL2 transcription factor affects lacteal uptake of
            chylomicrons
  JOURNAL   Cell Metab 6 (5), 406-413 (2007)
   PUBMED   17983586
REFERENCE   4  (bases 1 to 634)
  AUTHORS   Inoue,S., Sano,H. and Ohta,M.
  TITLE     Growth suppression of Escherichia coli by induction of expression
            of mammalian genes with transmembrane or ATPase domains
  JOURNAL   Biochem Biophys Res Commun 268 (2), 553-561 (2000)
   PUBMED   10679242
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY091059.1 and BC028502.1.
            
            On Jul 11, 2009 this sequence version replaced NM_021502.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ032499.1, CD769847.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-20                BY091059.1         2-21
            21-634              BC028502.1         1-614
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 71.92 cM"
     gene            1..634
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /note="trafficking protein particle complex 2L"
                     /db_xref="GeneID:59005"
                     /db_xref="MGI:MGI:1916295"
     exon            1..68
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..455
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /note="trafficking protein particle complex 2-like"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit
                     2-like protein"
                     /protein_id="NP_067477.1"
                     /db_xref="CCDS:CCDS22742.1"
                     /db_xref="GeneID:59005"
                     /db_xref="MGI:MGI:1916295"
                     /translation="MAVCIAVIAKENYPLYIRSTPTESELKFHYMVHTSLDVVDEKIS
                     AMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRK
                     LHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMMIQVC"
     exon            69..241
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /inference="alignment:Splign:2.1.0"
     exon            242..329
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /inference="alignment:Splign:2.1.0"
     exon            330..409
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /inference="alignment:Splign:2.1.0"
     exon            410..610
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /inference="alignment:Splign:2.1.0"
     regulatory      588..593
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /note="hexamer: ACTAAA"
     polyA_site      608
                     /gene="Trappc2l"
                     /gene_synonym="1810017G16Rik; Hspc176; Tca17"
                     /note="major polyA site"
ORIGIN      
        1 atcgggtcac atgatgtggc gcacagcctg ccaatatggc ggtgtgcatc gcggtgatcg
       61 ccaaggagaa ttaccctctg tacatccgaa gcactccgac agagagtgag ctcaagttcc
      121 actacatggt gcacacgtct ctggatgtgg tagacgagaa gatctctgcc atggggaaag
      181 cactggtgga ccagagggag ctgtacctgg gcctgctcta ccccaccgag gactacaagg
      241 tatatgggta tgtgaccaat tccaaggtga aatttgtcat ggtcgtggat tcctccaata
      301 cagcccttcg ggacaacgag atccgcagta tgttccggaa gctgcataac tcttacacag
      361 atgtgatgtg caaccccttc tacaacccgg gagaccgcat ccagtcaagg gcctttgata
      421 ccatggtgac ttccatgatg atccaggtgt gctgagtggg gacctctgcc tgcctcagtc
      481 gttcagaaga gaagcctgcg ttcacccctg ttggatgata cttatttatt ccctttctgc
      541 tccctgagtg taccctgtgg gcagggctgt gtcccctgtg cttttctact aaaggcctca
      601 caagatgaga aaaaaaaaaa aaaaaaaaaa aaaa
//
