LOCUS       NM_001417820            1126 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus trafficking protein particle complex 2B (Trappc2b),
            transcript variant 3, mRNA.
ACCESSION   NM_001417820 XM_006533918
VERSION     NM_001417820.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1126)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645602.14.
            
            On Mar 10, 2023 this sequence version replaced XM_006533918.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ840365.1, SRR17253014.1335817.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-413               AL645602.14        92885-93297         c
            414-1126            AL645602.14        89575-90287         c
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 31.26 cM"
     gene            1..1126
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
                     /note="trafficking protein particle complex 2B"
                     /db_xref="GeneID:66050"
                     /db_xref="MGI:MGI:1913300"
     exon            1..413
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            414..1126
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             437..859
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
                     /codon_start=1
                     /product="Trafficking protein particle complex subunit
                     2-like"
                     /protein_id="NP_001404749.1"
                     /db_xref="GeneID:66050"
                     /db_xref="MGI:MGI:1913300"
                     /translation="MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDEHRHLNQFIAHA
                     ALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRLIMLHDVRHEDGIKNFFTDV
                     YDLYIKFAMNPFYEPNSPIRSSAFERKVQFLGKKHLLN"
     regulatory      923..928
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
                     /note="hexamer: GATAAA"
     polyA_site      944
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
     regulatory      1102..1107
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1126
                     /gene="Trappc2b"
                     /gene_synonym="0610009B22Rik"
                     /note="major polyA site"
ORIGIN      
        1 attttgcttt ctggcattct tgtagttaaa agctccgcct cacttggcag tctggtccac
       61 atctcccgcc aggcttccgg tctctacacc tccaggcgaa cgtcagtgac aacataagca
      121 agtacgcgtg cggtgaaggc aaggattgct ctaagagcca gaggaggccc gcggggaccc
      181 cgacgtccca tgaggccttg acccaagatg gcggacaaaa cccttagcgc agccttgctc
      241 agagacgcat gtgcgcatgc ccggtcgact gagctgccct gatccaagat ggcggccgga
      301 ccggggctgg ggacgggctt agcgcgttac tgagcatgct cagtcttccg tcacttgcgt
      361 caggtcggca gccggcgcag gccgctcagt ccttcccgga gaggcgggaa catgagccac
      421 atatagacag aagacaatgt ctgggagctt ctacttcgta attgttggcc accatgataa
      481 tccggttttt gaaatggaat ttttgccagc tgggaaagca gaatctaaag atgaacaccg
      541 tcatctgaac cagttcatag ctcatgctgc tctggacctc gtcgacgaaa acatgtggct
      601 ctccaacaac atgtacttaa aaactgtgga caaattcaat gagtggttcg tctcggcgtt
      661 cgtcacggct gggcacatgc ggctcatcat gctgcatgac gtgaggcacg aggatggcat
      721 caagaacttc ttcactgacg tctacgactt atacatcaaa tttgccatga atccctttta
      781 tgaacccaat tctcctattc gatcgagtgc attcgaaaga aaagttcagt ttcttgggaa
      841 gaaacatctt ttaaactaaa tgcagaaaaa cttcagaatc acagtggggt gtgctcagca
      901 gtggatgtat tgtaaattac ttgataaagt agcctagcaa actctttatg tctcagctta
      961 cctgtatatc atgaaatttc tcttctattt aaaaatctca tcttttcatg ttatcactac
     1021 tagtagttac ctgtgaacaa ttatcactaa tttaatattt tatttcaaaa tcaataagcc
     1081 tataactttt tgattaagag aattaaaaaa tcttagattc ctttta
//
