LOCUS       NM_001093759            3560 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus trafficking protein particle complex 13 (Trappc13),
            transcript variant 2, mRNA.
ACCESSION   NM_001093759
VERSION     NM_001093759.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Kim,J.J., Lipatova,Z. and Segev,N.
  TITLE     TRAPP Complexes in Secretion and Autophagy
  JOURNAL   Front Cell Dev Biol 4, 20 (2016)
   PUBMED   27066478
  REMARK    Review article
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK149832.1, AK084373.1, AC154216.1 and CF586080.1.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice site in the 3' coding region, compared to variant 1,
            resulting in a shorter protein (isoform 2).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK084373.1, AK167749.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                AK149832.1         4-54
            52-1778             AK084373.1         2-1728
            1779-3181           AC154216.1         109425-110827
            3182-3560           CF586080.1         25-403              c
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 56.28 cM"
     gene            1..3560
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /note="trafficking protein particle complex 13"
                     /db_xref="GeneID:66975"
                     /db_xref="MGI:MGI:1914225"
     exon            1..353
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             308..1561
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     UPF0533 protein C5orf44 homolog; trafficking protein
                     particle complex subunit 13"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 13
                     isoform 2"
                     /protein_id="NP_001087228.1"
                     /db_xref="CCDS:CCDS49352.1"
                     /db_xref="GeneID:66975"
                     /db_xref="MGI:MGI:1914225"
                     /translation="MEVNPPKQEHLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLFNQ
                     LMKDDPSTVNGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKAD
                     LQTSSQRLNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQGGEKMYF
                     RKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIM
                     YNVTELNSVTQAGECISTFGSRGYLQPMDTRQYLYCLKPKKEFAEKAGIIKGVTVIGK
                     LDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSE
                     RMMDLVLEMCNTNSIHWCGISGRQLGKLHPSSSLCLALTLLSSVQGLQSVSGLRLTDT
                     FLKRTYEYDDIAQVCVVSAAVEVEA"
     exon            354..422
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            423..522
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            523..607
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            608..735
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            736..808
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            809..853
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            854..871
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            872..1005
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1204
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1305
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1306..1453
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..3546
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1731..1736
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /note="hexamer: ATTATA"
     polyA_site      1752
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /note="major polyA site"
     regulatory      3167..3172
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3184
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
     regulatory      3521..3526
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3546
                     /gene="Trappc13"
                     /gene_synonym="2410002O22Rik; 2610524F24Rik"
                     /note="major polyA site"
ORIGIN      
        1 ctcccccacc cccaccgggc aatgaaagct tttgggaagc cgcgaattgt cagcaagaag
       61 tggatcgttg tagtcagcct tagtggttga ggcaagtgtg tgcttctgag ctaaggaatg
      121 gccatggtac aaagatttca ctggggccgt aaaggattta gtgacaagag aatttaagtc
      181 ctcacgagca gaaagaagtc gggcgtgcgt ttgaagcccg atcttccggg acctgtgctt
      241 tgcactttcc ttccagaccc ggtgaaactt cagcctgcgt aggctgaggt cagaagtgcc
      301 cgccaagatg gaagtgaatc cccccaaaca ggagcacctg ctggcgctaa aagtgatgcg
      361 attgactaaa cctactttgt tcaccaatat tcctgtaacg tgtgaagaga aggacttacc
      421 tggtgatctc tttaaccagt taatgaaaga tgatccttca actgtaaatg gtgcagagat
      481 tttaatgttg ggagaaatgt tgactttacc ccaaaatttc gggaatatat ttttgggaga
      541 gaccttttcc agttatatca gtgttcacaa tgacagcaat caagttgtaa aagatatatt
      601 ggtgaaggcg gatctgcaga cgagttctca gcgtttaaac ctttcagcct ccaatgctgc
      661 tgtggctgaa cttaaacccg actgctgtat tgatgacgtc atacaccatg aagtaaagga
      721 aattgggact cacatcttgg tgtgtgctgt gagttacaca acgcagggtg gagaaaaaat
      781 gtactttagg aaattcttca aatttcaggt tctcaaacca ttggatgtga aaaccaaatt
      841 ttacaatgca gagagtgacc tcagttctgt gactgatgaa gtatttcttg aagcacaaat
      901 tcagaatatt acaacctcac caatgtttat ggagaaagtt tcactagagc catcaataat
      961 gtacaatgta acagaattaa actcggtgac ccaggctgga gaatgcatat ctacatttgg
     1021 gtccagagga tatttgcagc caatggatac acgccaatac ttatactgcc taaagcccaa
     1081 gaaggaattt gcagaaaaag ccggcataat taagggagtg acagtaattg ggaaactgga
     1141 tatagtgtgg aaaacaaatc taggtgaaag gggacggtta cagaccagcc agcttcaaag
     1201 gatggctcca ggttatgggg atgttaggct gtctttagag gccatcccag acactgtaaa
     1261 cctagaagaa cctttccata ttacctgtaa aatcacaaac tgcagtgaga ggatgatgga
     1321 cctcgtgctg gagatgtgca acaccaattc catccactgg tgtgggatct caggacgaca
     1381 gctggggaaa ctgcacccca gctcctcgct ctgcctggcc ctgacgctcc tgtcctcagt
     1441 acaggggctc caaagtgtct ctggcttaag actcactgac acatttctaa agagaacata
     1501 cgaatatgat gacatcgcgc aagtctgcgt agtctcagca gccgtggaag tggaagccta
     1561 aagaaaattc ctaatgttag acttcttgtt taatcacaga aatgctctct gtatttcgtc
     1621 agctttgtgc agtgatcagt agtgaaaaca agtatatgtt atttaaatgt ttcttgtaaa
     1681 acagttcaat tttaaacgtt tgttgtaaaa acactacttt tatctttcaa attatattct
     1741 agaggaacaa aacatttctt tattttctgt atatattttg tgtcctttaa gatacctgtc
     1801 attttttttg ttttcaacaa gctcatcttt gaggcttttt gtctaacaag tatataaaaa
     1861 gcagtcagcg aacctttttg taaagggctg ggtatcagat gtcttatgct cggtgaacag
     1921 atgaattctg ccatctgagt aggcaggcag gtgtatccgt ggttgatgga cctgcttgcc
     1981 aaggccccta ggctacacac taactctgct ggaagacacc atttgcttta ggattatcga
     2041 atttccatga tacttaatat agaaagttag ttgaactaat catggtcaac tgcattctct
     2101 ttcctaggtg cttagtcaac aaagagaggc ctgtgtaaaa caattcagcc agagaaacat
     2161 ttcagttgtt ttcaaaattg ttgtatggtt gcatgtctgt cttagtgtac acataccaac
     2221 acacgttaac agacactcga gagcaggcca ggattgactg atttaattag ctttcaacaa
     2281 tgttagcaat tatttcactt taatctaaag actcctgggg tcttccctac tgaagaataa
     2341 agagcttatt ttcataatat acatttaaat gattccaact tcacatctga tttttttctt
     2401 tctttttttt tttttttttg gtttttcgag acagagtttc tctgtgtatc cctggctgtc
     2461 ctggactcac tttgtagacc aggctggcct cgaactcaga aatccgcctg cctctgcctc
     2521 ccgagtgctg ggattaaagg cgtcgccacc acgcccagct gtgactttta gctctctatc
     2581 atgtactaat ataaaagatt tatttgtccg tttaatcaca aacattcggg ggctggagag
     2641 acggctcaga ggttaagagc cctaactgct cttctagagg tcctgagttc aattctcagc
     2701 aagcacatgg tggctcacaa ccatctgtaa tgggttctga tgccctcttc tggtgtgtgt
     2761 gaagacaatg gtagtgtact cacatatata agataaataa atctttaaaa aaattacaac
     2821 cattcatgtc aggaacaaat cagcaagaaa actaaggctt acaacagctt tgcaataggt
     2881 atgcatcaaa acgcttccct gtttattagg gaaacaaaac ccatgctgtt aaataaactt
     2941 catcctagtt tggcgagttc aaaatcccta ctatatatta aaaatataac tcttgggctg
     3001 gagagatggc tcagcaatta agagcgctga ctgctcttcc agaggtcctg agttcaattc
     3061 ccagccaacc acatgatggc tcacagccat ctgtaatggg attcaatgtc tttttctggt
     3121 gtgtctacag acagcaacag tgtatccaca tacatgaaat aaaaaaatta aaagttctaa
     3181 aaaatataag tcaaagacaa aatctgtttt cttaaatgca taattattta ttgccatgac
     3241 aaattgtttg gtccaaaatg aaaggtatat tcagaagact tgcccctcac atacattagt
     3301 catgattgat gaatgtctgt gcaaaacaaa atataagcag tgagaactga ggtccgttcc
     3361 tttgggctga cagactggtc aagtcgtatt tatcagcatc ttcttatgac tgaaccactg
     3421 tttcagtcag taggaatgta caacttattc tgctatattc tttaggttac aaagtctctt
     3481 ctgtgtatac acaacatagc tgtgtactat tcatacttta aataaaggac agataatgcc
     3541 atcttaaaaa aaaaaaaaaa
//
