LOCUS       NM_177240               4338 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus trafficking protein particle complex 11 (Trappc11),
            mRNA.
ACCESSION   NM_177240 XM_620651
VERSION     NM_177240.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4338)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4338)
  AUTHORS   Kim,J.J., Lipatova,Z. and Segev,N.
  TITLE     TRAPP Complexes in Secretion and Autophagy
  JOURNAL   Front Cell Dev Biol 4, 20 (2016)
   PUBMED   27066478
  REMARK    Review article
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY713400.1, AK083445.1, AK042816.1, BF471544.1 and BC063065.1.
            
            On or before May 25, 2005 this sequence version replaced
            XM_620651.1, NM_177240.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660817.135443.1,
                                           SRR1660817.6704.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3                 BY713400.1         2-4
            4-2124              AK083445.1         1-2121
            2125-2560           AK042816.1         536-971
            2561-3539           AK083445.1         2559-3537
            3540-3777           AK083445.1         3539-3776
            3778-3824           BF471544.1         474-520
            3825-4338           BC063065.1         3435-3948
FEATURES             Location/Qualifiers
     source          1..4338
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 26.86 cM"
     gene            1..4338
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /note="trafficking protein particle complex 11"
                     /db_xref="GeneID:320714"
                     /db_xref="MGI:MGI:2444585"
     exon            1..152
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            153..378
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            379..548
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            549..619
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            620..734
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            735..834
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            835..908
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1005
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1139
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1140..1287
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1288..1381
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1382..1461
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1462..1540
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1595
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1596..1741
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1742..1803
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1804..1936
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1937..2067
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2223
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2224..2411
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2412..2560
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2561..2682
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2683..2802
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2803..2868
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2869..3025
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3026..3137
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3138..3229
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3230..3363
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3364..3531
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3532..4322
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4302..4307
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4322
                     /gene="Trappc11"
                     /gene_synonym="D030016E14Rik"
                     /note="major polyA site"
ORIGIN      
        1 aaggaagtgt cgccttctgt cgcccggtct gcggctgggg ctgttgcttg tcggtggccg
       61 cattcctaga cgcccctgcc tggctctctt gcctctttcg gggctgacgg cgactcgccg
      121 cagctgcagc gggtccaggg cgtgcggcca ggatttttcc ttgacgccct cagcatgagc
      181 cccacacagt gggacttccc tgtggagtta tgttgccggc cgatggcttt tgttacactc
      241 actggccttg atgttgtcta taatgctgtc catcgagcag tctgggatgc tttctgtgcc
      301 aatcggagag ctgaccgggt accaatttct ttcaaggtgc tcccaggtga ccatgaatat
      361 ccaaaatgta gatcaaagag aacgtcgtac gagtggtaca tccctaaagg ggtcttaaag
      421 acgggctgga tgaataagca cctgaacctg gtgccggcgc tggtggtcgt gttctatgag
      481 ctggactggg acgagcctca gtggaaggag aagcagtctg agtgcgctac cagagtggag
      541 attgtcaggc aaagtttgca agggagaaac acaaaagttg cagtcgtcct gattcaaaag
      601 aaaacgcctt taccgccagg ggaagatgtc attgcttcgg agcgggctgc ggccttatgc
      661 aatgtgtgtg agctctcagg caagtctctg tttgtgctgc cccacactga ccaccttgtg
      721 ggctacatta taagattaga aaatgcattt tatgagcatg cccagaccta ttactacacg
      781 gagatcagaa gagtgaaatc tcataaggaa tttttgaata aaacaacaca ccagcttttg
      841 tttgttagac atcagtttaa aatagctttc ttcagtgagt tgaaacaaga tacacaaaac
      901 gccctgaaga attataggat tgcctataac cttgtacatg aattgagggc ccatgaaact
      961 aatattctgg aaattaagac gatggcagga tttataaact acaagatctg taggctgtgt
     1021 tttcagcaca ataccccact ggatgcgatt gctcagtttc gaaaacacat tgacttgtgt
     1081 aagaaaaaga ttgggagtgc ggagctggcc tttgagcacg ccgcgtggat ggcaaaacaa
     1141 ttccaggcct ttggagactt atttgatgaa gccattaagt tggggttgac agctattcaa
     1201 acgcagaacc ctggtttcta ctatcagcag gcagcttact atgcccagga gcgaaaacag
     1261 cacgcgaaag ccctgtgtaa ccacgatgct gctgtgatgt accccaaccc tgatccctta
     1321 gaaacacaat caggcgttct tgacttttat ggacagaggc cctggagaca aggaatacta
     1381 agctttgacc tctcggaccc tgagaaagag aaagcaggga ttcttgccat tcagctgaag
     1441 gagagaagtg tcgtccactc tgaaataata atcgctcttc tgagcaatgc tgttgcccag
     1501 ttcaagaagt acaagtgccc acggatgaaa agccacctca tggttcagat gggagaggag
     1561 tactactatg caaaggacta caccaaagct ttgaagctgc tggactatgt gatgtgtgac
     1621 taccggagcg aagcgtggtg gactctgctc acgtcgatac tgacgacagc cctgaagtgt
     1681 tcctacctca tggcccagtt aaaagattat attacttatt ctctggaact ccttggacga
     1741 gcttcaactc tgaaagatga gcagaagtct cggatagaga agaacctcat gaatgtttta
     1801 atgaatgaaa gccctgaccc tgaacctgac tgtgatgtct tagcggtgaa gactgcgcag
     1861 aagctgtggg cggaccgggt ctctctggct ggcagcaatg tcttccagat aggcgtacag
     1921 gacttcgtgc catttgtaca atgcaaagcc aagttccacg ctccaagttt tcacgtggat
     1981 gttcctgttg agtttgatgt ttttctgaag gctgactgtc cacaccccat taggttttcc
     2041 aagctctgcg tcagctttaa taaccaggtt tacaaccaat tctgtgtatt ggaagaagca
     2101 tccaaagcaa gtgaggtctt agaaaatctg actcagggaa agatgtgctt agttcccggc
     2161 aaaacaagga aattgtcatt taaatttgtt gcaaaaacag aagatgtggg aaagaaaatc
     2221 gagatcacct ctgtggatct gtttctgggc agcgagtcag gccggtgtgt ggttttgagc
     2281 tggcagggag gaggaggaga tgctgcgtcc tcccaggaag ccctgcaggc tgcaaggtct
     2341 ttcaaaaggc ggccaaagct tgctgaggac gagatccact gggacagcgt cataatccag
     2401 gcaagcacaa tgatcatttc cagagtccca aacatctctg tccacctgcg acacgagccc
     2461 cctgctctaa tgaatgagat gtactgtttg gttgtcactg ttcagtccca cgagaagtcc
     2521 ccaatcaggg atgtgaagct cactgcgggc ctgaagccag ggcaggatgc caatctaacc
     2581 cagaaaactc atgtgacact tcacggggca gagctgtgtg atgagtccta cccagccctc
     2641 ctcactgaca ttcctgtggg agacctacac ccaggggagc agctagaaaa aacagtatat
     2701 gttcgctgtg gaacagtggg ttccagaatg ttccttgtgt acgtttctta cctgatcaat
     2761 acaactgttg aaggaaaaga aattatttgc aagtgtcaca aggatgatac tgtcacaata
     2821 gaaactgtct ttccatttga tgtcgcagtc agatttgttt ccacaaagtt tgagcacctg
     2881 gaaagagtct atgcagacat ccccttcctg ttgatgacag atgttttaag tgcctctcct
     2941 tgggccctca caattgtgtc cagtgagcta cagcttgctc catcaatgac tgcaatggat
     3001 catctggagt cccagataga caaagttgtc ttacagacag gagagagcgc tagcgagtgc
     3061 ttctgtcttc gctgcccgtc tgctgggaac attgaaggtg gagtggcaac gggacattac
     3121 attatctcct ggaagagggc ctcggttgtg gaaagcatcc ccgccgtcag caccgtcatc
     3181 acactgcctc acgtgattgc tgaaaacatc cctctccacg tgaacgcaga cctgccctcg
     3241 tttggacgtg tcagagagtc gttgcccgtc aggtaccacc tgcagaataa gaccgacttg
     3301 gttcaagatg tggagatttc tgtggagccc agtgacgcct tcatgttctc aggcctcaaa
     3361 cagatccgat tgcgtattct ccctggcacc aaacaggaaa tgctgtataa tttctatcct
     3421 ctgatggctg ggtaccagca gctgccgtcg ctcaacatca acttgcttag gtttcccaac
     3481 ttcaccaacc agctgctcag acgtttcatc ccgaccagca tttttgtgaa gccgcagggt
     3541 cgcctcttgg aggatacctc catcgctgct gcgtgatgtc caggaccggc gcttggtgtt
     3601 cttacagcgg agtcaagaga ctacctggga ggtctgctgt ggctgtagct ttgaccatga
     3661 tgaaaagtta atcttgacta ttttttcatg gacataatac cagctgctca gaggaactca
     3721 tggttgaaat attgaggaaa tcatcttctc tagtttcact aataaaagtt tgaactgtgt
     3781 catgtgatgt gaaaggggtg aggtcatcgt tgctgttagt gcaatgtgtc ttgatgtcca
     3841 gcatcaatag aaacagatac ccaagtgtgg ctgacagagg agatgcaact cacctgggtg
     3901 tgcctgcaag tgacccaccc tgtaagtccc ctgtgtactt agtgcagaca caggtctgac
     3961 ctctgggaga ggggttcatt ggagcagtta agagctgtgc tctatttacc tttagaaagt
     4021 ttcaaactac aacccacacg tgcatttgtg tgcgtcctgg ggacctgatt ataagcttag
     4081 ttgctagacc aagtttgtga gaatgaagca ttaagagttt tcagtcccgt tacataattt
     4141 cctaagtgct attcagaatg acctttaagt tcatgtaaat ggagacagat catatggtga
     4201 acattttctt tgtaaaatat cttaatttaa aactacataa tttcttagaa atttgtacta
     4261 tgcagactgc gggcatatta taaaaaggaa atagtgatgt aaataaaata tgttctcttt
     4321 caaaaaaaaa aaaaaaaa
//
