LOCUS       NM_026485               2393 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus TraB domain containing (Trabd), transcript variant 1,
            mRNA.
ACCESSION   NM_026485
VERSION     NM_026485.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2393)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2393)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
REFERENCE   3  (bases 1 to 2393)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Kitamura,H., Nakagawa,T., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of FLJ
            genes: the complete nucleotide sequences of 110 mouse
            FLJ-homologous cDnas identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (2), 127-135 (2004)
   PUBMED   15449545
REFERENCE   4  (bases 1 to 2393)
  AUTHORS   Inoue,S., Sano,H. and Ohta,M.
  TITLE     Growth suppression of Escherichia coli by induction of expression
            of mammalian genes with transmembrane or ATPase domains
  JOURNAL   Biochem Biophys Res Commun 268 (2), 553-561 (2000)
   PUBMED   10679242
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU510197.1, CX200611.1, AK146027.1 and AB030206.1.
            
            On Nov 8, 2006 this sequence version replaced NM_026485.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK017745.1, SRR7652917.203363.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                BU510197.1         81-95
            16-664              CX200611.1         1-649
            665-1620            AK146027.1         681-1636
            1621-2393           AB030206.1         33-805
FEATURES             Location/Qualifiers
     source          1..2393
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 44.59 cM"
     gene            1..2393
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /note="TraB domain containing"
                     /db_xref="GeneID:67976"
                     /db_xref="MGI:MGI:1915226"
     exon            1..78
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            79..143
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..1244
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /note="isoform 1 is encoded by transcript variant 1; traB
                     domain-containing protein"
                     /codon_start=1
                     /product="traB domain-containing protein isoform 1"
                     /protein_id="NP_080761.2"
                     /db_xref="CCDS:CCDS49696.1"
                     /db_xref="GeneID:67976"
                     /db_xref="MGI:MGI:1915226"
                     /translation="MEGEEKPAQEADVEPVVTAGTSEAVPRVLAGDPQNISDVDAFNL
                     LLEMKLKRRRERPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVV
                     VVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITE
                     QLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFL
                     SDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELP
                     RASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPPPSISGRVSRVAVK
                     AAFFGLLGYSLYWMGRRTLNLVLSLPAAQFCLQRVSEARPGR"
     exon            144..222
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            223..389
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            390..530
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            531..641
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            642..781
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            782..954
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1066
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..2386
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2365..2370
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2384
                     /gene="Trabd"
                     /gene_synonym="5730502D15Rik"
                     /note="major polyA site"
ORIGIN      
        1 ccgccccgcc ccggcccagc ccgtcagccc ggcgacgcgc gcatggaggc cggctgagga
       61 gcgccgccgc ctctctcggc atcctacatc aatcaggaag ctgctgtcca gccatggagg
      121 gagaggagaa gccagctcaa gaggctgacg tggaacctgt ggtaacagca ggcacctcag
      181 aagcagtgcc aagggtgctt gctggagacc ctcagaacat ctctgatgtg gatgccttca
      241 acttgctcct ggagatgaaa ctgaaacgac ggcgtgaacg ccccaacctt ccacgtacag
      301 tgacccagct agtggccgag gatgggagca gggtgtatgt ggtgggcact gctcacttca
      361 gtgatgatag caagagagat gtagtaaaga ctatccggga ggtgcaaccg gatgtggtcg
      421 tggtggagct ctgtcagtac cgggtgtcca tgctcaagat ggacgagagg acgctgctgc
      481 gagaggccaa ggaggtcagc ctggagaagc tgcagcaggc tgtcaggcag aatgggctta
      541 tgtctggact catgcagatg ttgctgctga aggtgtctgc tcacatcact gagcagctgg
      601 gcatggcccc tggtggcgag ttcagggagg ccttcaaaga ggccagcaag gtaccattct
      661 gcaaattcca cctgggtgac cgaccaatcc cagtcacctt taagagggcc attgctgcac
      721 tctccttctg gcagaaagtc aagctggcct ggggcctgtg cttcctgtca gacccaatca
      781 gcaaagacga cgtggagcgc tgcaaacaga aggacctgtt ggagcagatg atggccgaga
      841 tgattgggga gtttcctgac ctgcatcgca ccattgtctc agagcgtgac gtctatctga
      901 cctatatgct gcggcaggcc gcacggcgcc ttgagcttcc ccgcgcctct gatgctgagc
      961 ccaggaagtg tgtcccgtct gtggttgtgg gcgtcgttgg catggggcat gtgcctggca
     1021 ttgagaagaa ctggagtacc gacctcaaca tccaggagat catgacagtc cccccaccgt
     1081 ccatctcagg cagagtgtcc cgggtggctg tgaaggcggc cttctttggt ctcctgggct
     1141 atagcctgta ctggatgggc cgtcggaccc tgaacctggt cctgtcactg cctgctgcac
     1201 agttctgcct ccagagggtg agcgaagccc ggccaggccg gtaggaggac cgtgcaagga
     1261 agagactgca cctgggggct ctgctctgcg ccgagtgggg tgctcacgag gagctggcgc
     1321 cgcccgtctg gggatgtccc tggggacaga tgcatccaag ccacccccta tgggggccta
     1381 ggccaggctt tccctgcctt cccaatgccc agcccaccca aataaagaat atttaactgt
     1441 ctgagcccag gcttcccagc agcccacaca cacactgtgg ggccacctat gggcatcagg
     1501 gccaaccgca gtgtcaggac ccagcggcct agttccaaaa ggaccagaaa ctgaggggga
     1561 ggcactgaga caccccaccc ttaaccccag gtgggtttgg caagctgttg ctctacctac
     1621 ctcactgtgc cttgtgctct ggccggcagg agcatctggg cctgagtgca tctcactgtg
     1681 ggtttggggc tgagtggcca tgcacctccc tcctgggtgt gtggggcctg gcctggcctg
     1741 gacatgcatg tggcattgcc agctgcatct ctgcctgcag agagtctggt tttgtggggt
     1801 tttgttttct gtttttgttt ttgtttttta atgtcaaaaa gttttttact caggtaattt
     1861 tgacgtcaaa gagaaaacaa actgaagcaa atatcaggaa atacaagcct taaatccagt
     1921 gaggacaaag aagtcatctt tttatttgtg tttgtgtgcc ctgagtgggc agtgtgtgtc
     1981 agagtcggct tgggggtcca ggccagcccc tgctagacac cactacagct cagagtggcg
     2041 tggggctgcc tcagatatga gcctgcaagg ctgcccttgg tgttggtagg accttagcct
     2101 gattgctgtg cattaggtga gaggcccaaa ctgcactgag ggcagtaggc acccactatg
     2161 ggccacggct ggtttgtgtg cagccagcca ttcatgtgta caggctgtgg ctcctagtat
     2221 atggcacagc ctggcaagac ctagaccaca ttgattgtcc ttgtgttggc tgccaaatca
     2281 ggtgagacac ggagctgggt ggggacacag ggctggctgg ctgtgtactc tgtctcacac
     2341 ttgtggactc attccctaga aagaaataaa ttttaatttt ggaagcaaaa aaa
//
