LOCUS       NM_011906               1764 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus transmembrane protein, adipocyte asscociated 1
            (Tpra1), transcript variant 1, mRNA.
ACCESSION   NM_011906
VERSION     NM_011906.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Aki,T., Funakoshi,T., Nishida-Kitayama,J. and Mizukami,Y.
  TITLE     TPRA40/GPR175 regulates early mouse embryogenesis through
            functional membrane transport by Sjogren's syndrome-associated
            protein NA14
  JOURNAL   J Cell Physiol 217 (1), 194-206 (2008)
   PUBMED   18459117
  REMARK    GeneRIF: the functional plasma membrane transport of TPRA40 that
            regulates cell division of mouse embryos is mediated by NA14.
REFERENCE   2  (bases 1 to 1764)
  AUTHORS   Vadasz,C., Saito,M., Gyetvai,B.M., Oros,M., Szakall,I.,
            Kovacs,K.M., Prasad,V.V., Morahan,G. and Toth,R.
  TITLE     Mapping of QTLs for oral alcohol self-administration in B6.C and
            B6.I quasi-congenic RQI strains
  JOURNAL   Neurochem Res 32 (7), 1099-1112 (2007)
   PUBMED   17273929
REFERENCE   3  (bases 1 to 1764)
  AUTHORS   Desai,J., Shannon,M.E., Johnson,M.D., Ruff,D.W., Hughes,L.A.,
            Kerley,M.K., Carpenter,D.A., Johnson,D.K., Rinchik,E.M. and
            Culiat,C.T.
  TITLE     Nell1-deficient mice have reduced expression of extracellular
            matrix proteins causing cranial and vertebral defects
  JOURNAL   Hum Mol Genet 15 (8), 1329-1341 (2006)
   PUBMED   16537572
REFERENCE   4  (bases 1 to 1764)
  AUTHORS   van der Zwaag,B., Burbach,J.P., Scharfe,C., Oefner,P.J.,
            Brunner,H.G., Padberg,G.W. and van Bokhoven,H.
  TITLE     Identifying new candidate genes for hereditary facial paresis on
            chromosome 3q21-q22 by RNA in situ hybridization in mouse
  JOURNAL   Genomics 86 (1), 55-67 (2005)
   PUBMED   15953540
REFERENCE   5  (bases 1 to 1764)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   6  (bases 1 to 1764)
  AUTHORS   Vassilatis,D.K., Hohmann,J.G., Zeng,H., Li,F., Ranchalis,J.E.,
            Mortrud,M.T., Brown,A., Rodriguez,S.S., Weller,J.R., Wright,A.C.,
            Bergmann,J.E. and Gaitanaris,G.A.
  TITLE     The G protein-coupled receptor repertoires of human and mouse
  JOURNAL   Proc Natl Acad Sci U S A 100 (8), 4903-4908 (2003)
   PUBMED   12679517
REFERENCE   7  (bases 1 to 1764)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
REFERENCE   8  (bases 1 to 1764)
  AUTHORS   Yang,H., Egan,J.M., Rodgers,B.D., Bernier,M. and
            Montrose-Rafizadeh,C.
  TITLE     Differential expression of a novel seven transmembrane domain
            protein in epididymal fat from aged and diabetic mice
  JOURNAL   Endocrinology 140 (6), 2859-2867 (1999)
   PUBMED   10342878
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC153923.4.
            
            On Aug 10, 2022 this sequence version replaced NM_011906.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC057296.1, AK172045.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-224               AC153923.4         228623-228846
            225-354             AC153923.4         232265-232394
            355-486             AC153923.4         234257-234388
            487-619             AC153923.4         234500-234632
            620-706             AC153923.4         235606-235692
            707-779             AC153923.4         235824-235896
            780-859             AC153923.4         235997-236076
            860-970             AC153923.4         236467-236577
            971-1031            AC153923.4         236657-236717
            1032-1134           AC153923.4         236864-236966
            1135-1215           AC153923.4         237113-237193
            1216-1764           AC153923.4         237999-238547
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 39.65 cM"
     gene            1..1764
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /note="transmembrane protein, adipocyte asscociated 1"
                     /db_xref="GeneID:24100"
                     /db_xref="MGI:MGI:1345190"
     exon            1..224
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            225..354
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            355..486
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            487..619
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            620..706
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            707..779
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            780..859
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            860..970
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1031
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            1032..1134
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..1215
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..1764
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1746..1751
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /note="hexamer: AATAAA"
     polyA_site      1764
                     /gene="Tpra1"
                     /gene_synonym="40kDa; Gpr175; Tpra40"
                     /note="major polyA site"
ORIGIN      
        1 agttttgctt agacgaaaaa cactagccaa ggcgcctgag agtcgccgct gccaggggag
       61 gaccggggaa gtccgcgggt cccgtgagtc ctgcgcgctg gcggcgtccg gccacctctg
      121 accgatccac gtagcatctc agctgcggtt cttgcgcgac gctccccggt tctcgctacc
      181 tcgcaggggt cggagtcccg cggcctgcgc agccctgctc tcagtattcc ggctgacagg
      241 aaggaagaag ggcacgacct gaagctggcg agttgcactc tgttggtgtc cttgtggcca
      301 gtccctcctt caggggaagc tggagaaagc agactgaaat cccgggttct gctgggccac
      361 tgccggtgga atggccagcc tgcaggaggc caatggaagc acagcgtggc caccgcccac
      421 agcatccaat atcagtgagc cccaccagtg cctgctgctg ctatatgagg atattggctc
      481 ctccagggtc cggtactggg acctcctgct gctcattccc aatgtgctct tcttcatctt
      541 cctgctctgg aagcttccct tagctcgggc caagatccgt gtcacctcca gccccatttt
      601 tatcaccttc tacatcctgg tgtttgtggt agccctggta ggcattgcca gggctgtggt
      661 ttctatgaca gtcagcgcct ctgatgctgc gacagttgct gacaagatcc tgtgggaaat
      721 cacccgcttc ttcctgctgg ccattgagct gagtgtgatc atcctgggtc ttgcctttgg
      781 tcacctagag agcaagtcca gcatcaagcg ggtgctggct atcaccacag tattgtctct
      841 ggcctactca gtcacccagg ggaccttgga gatcctgtac cctgactccc atctttcagc
      901 tgaggatttc aacatctatg gccatggtgg ccggcagttc tggctcgtca gctcttgctt
      961 tttcttcctg gtctactcac tggtggtaat tctccccaag accccactga aggagcgtgt
     1021 atccctgccc tcacggagga gtttctacgt gtatgcaggc atcctggcca cactcaacct
     1081 gctgcagggt ttggggagtg ctctgctctg cgctaacatc attgtggggc tctgctgtgt
     1141 agatgccacc accttcctgt acttcagctt ctttgcacca ctcatctatg tggccttcct
     1201 ccgtggcttc tttggctctg aacccaagat ccttttctct tacaaatgcc aagtggacga
     1261 ggctgaagag ccagacatgc acctgccgca gccctacgct gtggcccggc gcgagggcat
     1321 agagtctgca ggacctgcct gcgcctctgc cgccaactac tccagcacac agtttgactc
     1381 tgctggggtg gcctacttag atgacattgc ctccatgccc tgccacacgg gcagcatcaa
     1441 cagcacagac agcgagcgct ggaaagccat caatgcctga gtgggcacct aagcctcggg
     1501 gaggcctgta aagacagatg ggaactcgtg tggatagccc tgggcaggtg tgcctgcacc
     1561 cccagcctct tcctgatctc cacccccatc ctcctttgcc tcctgtgctc tagtgtggga
     1621 ccgcagcctt cccagcactc cgttcctgct ggtgtcctgc ctgcccagca acttgtcctt
     1681 cttccattgc tctcgacctc ttggccacaa ggctgcagtg tatatatttt cttgatctat
     1741 tttttaataa aaataaaaag agta
//
