LOCUS       XM_006511041            1162 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus tropomyosin 1, alpha (Tpm1), transcript
            variant X5, mRNA.
ACCESSION   XM_006511041
VERSION     XM_006511041.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000075.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006511041.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="9"
     gene            1..1162
                     /gene="Tpm1"
                     /gene_synonym="alpha-TM; TM2; Tm3; Tmpa; Tpm-1; TPM1kappa"
                     /note="tropomyosin 1, alpha; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 9 ESTs, 373 long SRA reads, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 40 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:22003"
                     /db_xref="MGI:MGI:98809"
     CDS             308..1162
                     /gene="Tpm1"
                     /gene_synonym="alpha-TM; TM2; Tm3; Tmpa; Tpm-1; TPM1kappa"
                     /codon_start=1
                     /product="tropomyosin alpha-1 chain isoform X5"
                     /protein_id="XP_006511104.1"
                     /db_xref="GeneID:22003"
                     /db_xref="MGI:MGI:98809"
                     /translation="MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIA
                     AKEKLLRASEDERDRVLEELHKAEDSLLAADETAAKAEADVASLNRRIQLVEEELDRA
                     QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR
                     KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE
                     DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH
                     ALNDMTSM"
ORIGIN      
        1 ggtccccata tatagtcata tccaccgtca actgggaggc cggcaggcgg cagcgaatgg
       61 gcgtgcgggc ccccgcggga ggagcgagga gggggcacgg ggcggaggca ggagactggg
      121 aaagggggaa ggaggaacaa gcttttccaa aaaagtattg gctgtcctaa ggaatgcggt
      181 cgcccccctg ggaaagtaca tatcagggag cagcaggcag ctccgcgctc gcactccggc
      241 tctgctaccc caccgcgctc gcgtctcctc tcgctccgct gcctaagggc ccctcgccac
      301 cgccaccatg gacgccatca agaagaagat gcagatgctg aagctcgaca aagagaacgc
      361 cttggatcga gctgagcaag cggaggctga taagaaggcg gcggaagacc ggagcaagca
      421 gctcgaggag gacatcgcag cgaaagagaa gctgctgcgg gcgtcggagg acgagcggga
      481 ccgggtgcta gaggagctgc acaaggcgga ggacagcctc ctggctgccg acgagaccgc
      541 cgccaaggct gaagctgacg tagcttctct gaacagacgc atccagctgg ttgaggagga
      601 gttggatcgt gctcaggagc gtctggccac agctctgcag aagctggagg aggccgagaa
      661 ggctgcagat gagagtgaga gaggcatgaa agtcattgaa agccgagccc aaaaagatga
      721 agaaaagatg gagattcagg agatccagct gaaagaggcc aagcacattg ctgaagatgc
      781 tgaccggaag tatgaagagg tggcccgtaa gctggtcatc atcgagagcg acctggaacg
      841 tgcagaggag cgggctgagc tctcagaagg caaatgtgcc gagcttgaag aagaattgaa
      901 aacggtgacg aacaacttga agtcactgga ggctcaggct gagaagtact ctcagaagga
      961 agacaaatat gaagaggaga tcaaggttct ctctgacaag ctgaaggagg ctgaaactcg
     1021 ggctgagttt gcagagagat cagtaaccaa attggagaaa agcattgatg acttagaaga
     1081 cgagctgtat gctcagaaac tgaagtacaa ggccatcagc gaggagctgg accacgctct
     1141 caacgatatg acttccatgt aa
//
