LOCUS       NM_001406363            3959 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus tumor protein D52-like 2 (Tpd52l2), transcript variant
            25, mRNA.
ACCESSION   NM_001406363 XM_006500693
VERSION     NM_001406363.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3959)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3959)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3959)
  AUTHORS   Adissu,H.A., Estabel,J., Sunter,D., Tuck,E., Hooks,Y.,
            Carragher,D.M., Clarke,K., Karp,N.A., Newbigging,S., Jones,N.,
            Morikawa,L., White,J.K. and McKerlie,C.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Histopathology reveals correlative and unique phenotypes in a
            high-throughput mouse phenotyping screen
  JOURNAL   Dis Model Mech 7 (5), 515-524 (2014)
   PUBMED   24652767
REFERENCE   4  (bases 1 to 3959)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   5  (bases 1 to 3959)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
REFERENCE   6  (bases 1 to 3959)
  AUTHORS   Nelson,P.S., Pritchard,C., Abbott,D. and Clegg,N.
  TITLE     The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
  JOURNAL   Nucleic Acids Res 30 (1), 218-220 (2002)
   PUBMED   11752298
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929094.13.
            
            On May 13, 2022 this sequence version replaced XM_006500693.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784645.125594.1,
                                           SRR17784648.104855.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849377
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               AL929094.13        101167-101316
            151-296             AL929094.13        103829-103974
            297-445             AL929094.13        105889-106037
            446-505             AL929094.13        106860-106919
            506-607             AL929094.13        112150-112251
            608-634             AL929094.13        114488-114514
            635-679             AL929094.13        115555-115599
            680-728             AL929094.13        117023-117071
            729-3959            AL929094.13        119064-122294
FEATURES             Location/Qualifiers
     source          1..3959
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 103.63 cM"
     gene            1..3959
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /note="tumor protein D52-like 2"
                     /db_xref="GeneID:66314"
                     /db_xref="MGI:MGI:1913564"
     exon            1..150
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..824
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /note="isoform u is encoded by transcript variant 25;
                     tumor protein D54"
                     /codon_start=1
                     /product="tumor protein D54 isoform u"
                     /protein_id="NP_001393292.1"
                     /db_xref="GeneID:66314"
                     /db_xref="MGI:MGI:1913564"
                     /translation="MDSASQDINLNSPNKGVLSDFMTDVPVDPGVVHRTPVVEGLTEG
                     EEEELRAELAKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQV
                     STAYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTMGSAISRKLGDMRA
                     HPLSQSFSSSYSIRHSISMPVMRNSATFKSFEDRVGTIKSKVVGGRENGSDNLPPSPG
                     SGDQTLPDHAPF"
     exon            151..296
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     exon            297..445
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     exon            446..505
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     exon            506..607
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     exon            608..634
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     exon            635..679
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     exon            680..728
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     exon            729..3959
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1013..1018
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /note="hexamer: ACTAAA"
     polyA_site      1036
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /note="major polyA site"
     regulatory      1523..1528
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /note="hexamer: AATAAA"
     polyA_site      1554
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
     regulatory      2378..2383
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /note="hexamer: AATAAA"
     polyA_site      2406
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
     regulatory      3941..3946
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
                     /note="hexamer: AATAAA"
     polyA_site      3959
                     /gene="Tpd52l2"
                     /gene_synonym="2810411G23Rik; D54"
ORIGIN      
        1 aagcgactgc ggccctacag ttccactggc tcgtgtgtac gaagctgcca gcttgcagtc
       61 ctcggggctg ggctcctgta ggacctgcga tcccagcacc gacgccagct acacccagct
      121 gccgcctgaa catggactct gctagccaag atatcaacct gaattctcct aacaaaggtg
      181 tgctgtctga ctttatgact gacgtccctg ttgacccagg tgtggtccac cggactccag
      241 ttgtagaagg cctgacagag ggggaggaag aagagcttcg ggctgagctt gctaaggtgg
      301 aagaagaaat tgtcactctg cgccaggtgc tggcagccaa agagaggcac tgtggagagc
      361 tgaaaaggag gctgggcctc tccacattag gggagctgaa gcagaacctg tctaggagct
      421 ggcatgatgt gcaggtctct actgcctatg tgaaaacgtc tgagaaactt ggagagtgga
      481 atgagaaagt gacgcagtct gacctctaca agaagactca agaaactctt tcacaggctg
      541 gacagaaaac atcagctgcc ctgtccacca tgggctctgc catcagcagg aagcttggag
      601 acatgagggc tcatccgctc tcacaatcct ttagcagcag ctactccatc cgccactcga
      661 taagtatgcc tgtcatgagg aactcagcca ccttcaagtc atttgaagac cgagtgggga
      721 ccataaagtc taaggttgtg ggtggcagag agaatggcag cgataacctc cctccctctc
      781 ctggaagtgg tgaccagaca ttgccggatc atgcgccttt ctaagcctgt cctagcttgc
      841 cagccacaga gtacagaagc acacgctcat catcacagct gcaactctgc atgacagagc
      901 caccagccag agacagtgaa gagctggttt tgaagacagt catacccatg ttcatgcaga
      961 tgtggctgcc ttggcatgaa ttagagaaca gtcttgtaca taaatgtttt acactaaagt
     1021 tcgtagatga agcagaccac tgtgccatcc tttcaagggc cacaggaaat ggacagggtg
     1081 gcggggcact caggcctgag gagcactgaa ccaggagccc tgctcccttt gaaggtctca
     1141 gcagagtgct gagggaagaa gtgtgagtat tgagtgaaca gtatttcctt cctgacctcc
     1201 tcccctagct caggaggaat acacttacct aggtaatatc gcatggtcgc agttgtcata
     1261 cagactgaga gagagttgtc tattttctga gaccctagaa aggaaacata gcaactgctt
     1321 cattcttaca ctaacaacct ggctttggca gaagcagatt tactattttt taaatgtgat
     1381 agtcttttca aaaattaaat aggaaaaaaa agtgaggcaa gacagcttta gcctcattgt
     1441 tgaatattat ttctttgaat tcaagctgaa actcaagcct tacattgcct tatgctttgt
     1501 ttatagtctt tttatatatc taaataaatg aaggttcttt aatgggttat gatacaatgt
     1561 agaattttat tctggcccat ctcatactcc tgccagtacc agttattaca ttttatttct
     1621 ttaatacttt ctcctggtgt gcaaaacttg gttctcttaa ggagtggcat tttccaatag
     1681 ctttccactc tgacccacag ggctcttgtg ctgtaggtta ggagagctga gagaagaaaa
     1741 aaaagccttt atctttagca cctgaatggg atgtgccctg cacagtgttg ctttactgac
     1801 agtgggcagg gctctggtcc atagtctctg cctgtctgtt tattacatgg agaataaatg
     1861 aaccagcctt acagatcagg taggggatgt ggttttggtt cagccagaac tctgctgtca
     1921 tcttttctca ggagcttcaa agatttcttt ctaagttctt tcctcctgct tccaattgcc
     1981 acattctgca gcctctcaat accagggccc tgtgtgttga gatcatgatt tggagagagg
     2041 gccagcactg tgccttaatg gctcttagca gggcaaagac tttatctgtt tgtacacatc
     2101 tctacactcc tagggtgagg tgggatttgt ccattttagt ttctggtttg acacagtgtg
     2161 aggtgtcttg gttatcaagt attcctggtt tctttggaca cccttagaat actctaccac
     2221 acaaagcaag gaacaacgaa taactgggga gctgaagaag agcacaccat tggtgtcttc
     2281 ttttccaggg ttaaaaacaa tagctgtgtg agggaacaca ttacaggagt gtaggtcact
     2341 gatatatctt cctacaaata ttagcaggca gcttgtcaat aaagcattcc tttggaggaa
     2401 aatccacatc catttgtttg gtctgtcttt taggataatg acaagagatc agagtaaatg
     2461 catatgattc cttgctttga acggggacaa gcaggagaca acatgtataa attacgagtc
     2521 tttggtgtgc atataaaaaa ggagggaatt gtgtagaagg tgtatctctg gataagacca
     2581 agaatatata ccaggcatgc aatgtagagg tttacagtcc attatcaaga ttggctacac
     2641 taaaggggcc tttttgtccc agtaaacatc ttgttttgct gacttttgct atgaagctat
     2701 gccaggagct cacctggcag aagagggcat taaggaagac cagcatctta agtcccactg
     2761 agagaagact gttaccccat ggtacaacaa tccttaggag gtatgctctt attctgcaga
     2821 tgaggggcca tgtgaaataa tgagtaattg aagaccctta agtgcttatc gaacagggta
     2881 agttggagtt gtgggccaga ttaaaagggc taagtggtat gggtgggatg gggagtgacc
     2941 ctcgcactgg gcaagcctcg accacagggc aacaactaca tctgggctag aaagtcaata
     3001 tttgcactag atgatattgg aagacaattc actatgctcc agtcattaag caaatactat
     3061 aacatgctct gtggatgaga ggttgcctac tgggctttgt gggtacatga ctgtgttcat
     3121 ggacccaggc ctcgactgta ctccttaaaa gatgtgttcc tcctcacaac tctggttctc
     3181 atcacatgag gtgatgaagg cctcagagag tactgtagac tggagcaagc tgagaatggg
     3241 tagaaccagg gcatgttgga gggtttgtac tagggaagac tccgactgag gatggtggaa
     3301 tctgcctaat tgatataaag ggacaaaata aagcttagca tcaaaggcaa aacctgaaaa
     3361 ccccctcaaa tatgtaactg ctgccagaat tcctgtcata cagtctctta aaggttgaca
     3421 tactagattg gcatagtggc atatacacct tcagcactta ggaggcagag gcaggtaggt
     3481 gtctgtgagt gtgaggccag cctggtctat gaagagagtt caaagatagc aagggctaca
     3541 caaaaaaacc ctgtctataa atcaaggtta cagttaggtt ataaataaac aaataaacaa
     3601 gcttgctaat ttgtgaacat ttgtaaggtt ttttttttta aacatgcttt tggagtttac
     3661 tgtgaagaac tgtcacaagc attgtgtgtg tgtgttgtag ccattctttg cctatagtta
     3721 ttgtgtgtag tttaatgact atatttcatt tgaatgtgct tatttgtaca gttgggcagt
     3781 tttccatatt tacttataag ttttctcttt ctcctttttt gtttattttg ttgacacgtg
     3841 gtttctctgt gtacccctgg ctgtcctgga acttgctctg tagaccaggc tggccttgaa
     3901 ctcacagaga tctacctgcc tctgcctccc aagtgctgag aataaactgt ctgctgcca
//
