LOCUS       NM_001037170            4650 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus translocase of outer mitochondrial membrane 40-like
            (Tomm40l), transcript variant 1, mRNA; nuclear gene for
            mitochondrial product.
ACCESSION   NM_001037170
VERSION     NM_001037170.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4650)
  AUTHORS   Chung,Y.C., Tsai,Y.J., Shiu,T.Y., Sun,Y.Y., Wang,P.F. and Chen,C.L.
  TITLE     Screening large numbers of expression patterns of transcription
            factors in late stages of the mouse thymus
  JOURNAL   Gene Expr Patterns 11 (1-2), 84-92 (2011)
   PUBMED   20932939
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC084821.26 and AC163497.14.
            
            On Oct 18, 2022 this sequence version replaced NM_001037170.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK028388.1, SRR17784643.51072.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-77                AC084821.26        123077-123153
            78-327              AC084821.26        123375-123624
            328-395             AC084821.26        123889-123956
            396-488             AC084821.26        124268-124360
            489-590             AC084821.26        124622-124723
            591-696             AC084821.26        124876-124981
            697-819             AC084821.26        125105-125227
            820-896             AC163497.14        110-186
            897-999             AC163497.14        399-501
            1000-4650           AC163497.14        635-4285
FEATURES             Location/Qualifiers
     source          1..4650
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 79.22 cM"
     gene            1..4650
                     /gene="Tomm40l"
                     /note="translocase of outer mitochondrial membrane
                     40-like"
                     /db_xref="GeneID:641376"
                     /db_xref="MGI:MGI:3589112"
     exon            1..77
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            78..327
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     CDS             213..1139
                     /gene="Tomm40l"
                     /note="translocase of outer mitochondrial membrane 40
                     homolog-like"
                     /codon_start=1
                     /product="mitochondrial import receptor subunit TOM40B"
                     /protein_id="NP_001032247.1"
                     /db_xref="CCDS:CCDS15481.1"
                     /db_xref="GeneID:641376"
                     /db_xref="MGI:MGI:3589112"
                     /translation="MGNTLGLAPMGTLPRRSHRREEPLPNPGSFDELHRLCKDVFPAQ
                     MEGVKLVVNKVLSSHFQVAHTVHMSALGLPGYHLHTAYAGDWQLSPTEVFPTVVGDMD
                     SSGSLNAQVLLLLAERLRAKAVFQTQQAKFLTWQFDGEYRGDDYTATLTLGNPDLIGE
                     SVIMVAHFLQSITHRLVLGGELVYHRRPGEEGAILTLAGKYSAVHWVATLNVGSGGAH
                     ASYYHKANEQVQVGVEFEANTRLQDTTFSFGYHLTLPQADMVFRGLVDSNWCVGAVLE
                     KKMRPLPVTLALGAFLNHWRNRFHCGFSITVG"
     exon            328..395
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            396..488
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            489..590
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            591..696
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            697..819
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            820..896
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            897..999
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..4650
                     /gene="Tomm40l"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1549
                     /gene="Tomm40l"
                     /note="major polyA site"
     regulatory      2838..2843
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tomm40l"
                     /note="hexamer: AGTAAA"
     polyA_site      2858
                     /gene="Tomm40l"
                     /note="major polyA site"
     regulatory      4629..4634
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tomm40l"
                     /note="hexamer: CATAAA"
     polyA_site      4650
                     /gene="Tomm40l"
ORIGIN      
        1 attactcaag atggctgccc ccatcaagat gaccgggtgt gcctaggggg aaagaggctg
       61 caggatggtc tgagatggtc tagcattgaa ccatatggaa gtttctgaaa ctggggagcc
      121 cgatgatggg gggtggagcc cgtgggggat agagggagca atagatttta tccccaggct
      181 aaccccaacc cctccctgtc ctctggatta aaatggggaa caccctgggc ctggcaccga
      241 tgggtacttt accccgccgg agccaccgtc gagaggaacc gctgcccaac cccgggagct
      301 tcgacgagct gcaccggttg tgcaaagatg tattcccagc acagatggaa ggcgtgaagc
      361 tggttgtcaa caaggttctg agcagccatt tccaggtggc tcatactgtg cacatgagtg
      421 ccctgggctt gccagggtac cacctccata ccgcctatgc aggggactgg cagcttagcc
      481 ccacagaggt gttccccact gtggtggggg atatggacag cagtggcagt ctcaacgccc
      541 aggtcttgct tctgttggca gaacggctgc gagctaaggc tgtcttccag acacagcagg
      601 ccaagttcct gacatggcag tttgatggcg agtatcgggg agatgactac acagccactc
      661 tgaccctggg aaatccggat ctgattgggg aatcagtgat catggttgct cacttcctgc
      721 agagcatcac ccatcggctt gtgctaggag gagagctagt ttatcaccgg cggccaggag
      781 aagagggggc catcttgact ctggctggga agtactcagc tgtccactgg gtagctacgt
      841 tgaatgttgg gtcaggtggg gcccatgcaa gttattacca caaggccaat gaacaggttc
      901 aggttggagt agagtttgag gcaaatacaa ggctacaaga tacgaccttc tcctttggtt
      961 accacctgac tctgccccag gccgatatgg tgtttagagg cttggtggac agtaactggt
     1021 gtgttggtgc ggtgctggag aagaagatgc gtcccctgcc tgtcacccta gcccttggag
     1081 ccttcctcaa tcactggcga aacagattcc attgcggctt cagcatcact gtgggctgag
     1141 gttgtcctgg gagcagcctc tgcagcagct ggaacctttg agtctgatac cctagggcca
     1201 gagactaact tggtccctct ccagagccta ccttgccgga tgactcctag gtcccatggg
     1261 cagagtgggg gggacaggac gatgtcctcc tcagaaccag aactgccgga gagtcatttt
     1321 ttccagttag gtagcgggtt gaggttccca atactgccat cagccccact ataatctccc
     1381 ataagctgta tggctctgga gtaaaggaga gggactacgg gatgtgtctg gcttccctca
     1441 ccctactttt tttgttattt ttgtttgatt gagatattac tactccttct tcaaagcaga
     1501 gaaatctgca tggaaagagg gagcagaaaa aaaaaagcct cctatcccat ttctcctggt
     1561 ttctccattc ctcagtcttc cactccttcc ctcgggaagg gaggattaaa gagttaaatc
     1621 tctggccaca gaaagaccaa agaatgggcc cacccattcc cagaaggaac tctagtcacc
     1681 tcctagcccc gaggcttcca tctttcccat cccctgtgtt tccggagaac aactttggcc
     1741 ctgtggttgc ccacctccct tctctctgtc ccccacccac tccacgcccc actgatgagt
     1801 gcactaagag acagtgactg ttcagcattt cattgccact cccaagctcc ttcctgctgg
     1861 ttcccgtgtg gggtccagcg ctgtaccctt tccaggccag tgtatccctg ggggtctggg
     1921 gaaaggatgc aagcctgggc ctcaactgca aatctccccg agcagcggcg tcatagcaga
     1981 cagttcctcc aagcgctgaa gttcatagga gtatgcattg tttatactcc ggaggtcagc
     2041 cagcaggccc atcagctttg catacagaaa cctttggagg aaggagcagg gttaccaggg
     2101 aaataaggca gctgggagtc ctgtcctgag gttcctatcc cctggaccac tcctcagaga
     2161 ggctaagtct gagcagcaga tgctctggag ctacatcttg gaaaatctca gacataccca
     2221 agaagggcct ctatcaacac tgttccttca ttgtgcctag tttttcctga acccagggct
     2281 ttgaggtcaa gtgtaaaaga agttcttggc caaaacgtca actgtataga atctgaaggt
     2341 gaggccttct agatccagtt ctagaaggcg gttgtgttat tctatagtat aaagcatctc
     2401 cctcgtagca aacggattca ttagggaatg agcagagcga aggtggcata gatgtctgag
     2461 cctgcactgt tgaactaggc tctgtccgtg aaagtgtgac ggatcctaat ttcaagggga
     2521 cctaaaactt caaggaattg acccaaagga gaggagcggg ccaaaagaat gaacaagact
     2581 ttgaaatttt gactttagtt tggaaaagtc ggagaggtga gaggtaagga atgtcaccag
     2641 tctcaggaaa gctgtcacac ccaggccatg agctacgact ttgcatctct actgactgaa
     2701 aacaacaaca ggagccaaca acttggaaaa gggagacaac acagcagtct gagcaatctg
     2761 gatactgtgt gcgatggatg gggtggtccg agggaaggtc tagattccta agtacctggt
     2821 ttcccaaagg aaacaacagt aaaatgcatc catccggagc tcagtgtttc acagatccct
     2881 tcctaccccc ggcgcagcct ccgaatccgc tgcctccttc ctccctaccg actttggagc
     2941 cgagactgtt gttccataat gtggttgttc agaatcagcg ccatctcctc ttgtagctga
     3001 tctatctctt ctctttgggt aactccgggt ctgtctgaga gaggagactg ggaagggcaa
     3061 ggtggcaggg gccacagatg ggggcctcac attgtatagg ggctggggat ggtatagata
     3121 gacccttgct taggcttgaa agctagaagg tcagggaagg attaaaggga ccgagagttg
     3181 ggtagaggtg gaaggggcca gagttcctca gctttgggat gatcctcacc aggggagaag
     3241 agggccgtgg cagccatgag cacatactca ggctcctgga gatgcagtcc tttcaggttt
     3301 ttatggaagt ggaggatcga ctccaaaaac tcgtactgga accctgctgt gagagatggt
     3361 agactgagga gcctcctggc cattgctcca cacctcatac cactgagata cataccctgg
     3421 accgttctac catctcacca tggactgcgt cctccatctt gtagcaaaga ggcccacaga
     3481 agaaattctc tgtttgaaga cagaacgtag tgttgagtga gatatgcaat atttccacag
     3541 ccgctccctt gagaagggag atctggtcct ccatggttag ggacctgtgt cgggtagaaa
     3601 acaagggcac tttagactta ggtctatcca tcaaaaaaaa ggtccaatcg gcacactgca
     3661 aatgtaagac cctagcactc agaaggctaa aggatgtcat accagtcttt aatcggagac
     3721 cggtctgact taccgagcga gcacttgctt cctgaaaggc catgtgctac tcaccggaag
     3781 agcggcagat ccttggtgaa cttgatgatc tgttgcacca taaacgtgtt gatatctgca
     3841 aagtgtgtga gcagaggcaa cacggggccc cgaggctgga aaggccggtg atgcatgaac
     3901 agataggccg gaggctgtag agttcagagc tttagtaaga ggccccagcc ttggctgccc
     3961 ttgagggctc accaggctta tctaagaaag gttttttgct gaggaacctg cccatcgtgg
     4021 gattctggag atctgttctc catcagggca tagccttctt ctgtgggtta cctcctcagg
     4081 tacccaggtc acatcctggt taagttctca ccttgaactg cacaaactgg tcaaacatgg
     4141 ggcccacatg gcgagtgtgg gcccccagga ggatctggac cagttctttc tgctgctgat
     4201 tcagttgcaa agatgctttc tctgcccgcc gctgtgcctg tctggctcgc cgcaatgcca
     4261 gggcttctgc tgacagtatc actgtgtcag gcaagagaga tgacaaagct gttgagacca
     4321 gcagcgagca cctttcagcc atcccttcag ttggggccac tccacctccc cagataagga
     4381 aggaggaagg aagaaagagt ttctgaggct tccttgggac ttcattgaat taatgtttcc
     4441 tgatggcagg ggaatccctg cacactttct gtcgatctca tattcatctg tgatacactt
     4501 cagcagaaag caatgcacca tgggaaagaa ggggagggtg gagaataaag tgggaagggt
     4561 atagaatgtt tggctccttg gaaacattga agaagggtct taatattgga aacatcactt
     4621 tgtatctgca taaatcgtga tttcaaaggc
//
