LOCUS       NM_177087               3503 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus TOG array regulator of axonemal microtubules 2
            (Togaram2), mRNA.
ACCESSION   NM_177087
VERSION     NM_177087.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3503)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 3503)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB868766.1 and AK158647.1.
            
            On Apr 21, 2007 this sequence version replaced NM_177087.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158647.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849387, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-215               BB868766.1         2-216
            216-3503            AK158647.1         1-3288
FEATURES             Location/Qualifiers
     source          1..3503
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 42.06 cM"
     gene            1..3503
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /note="TOG array regulator of axonemal microtubules 2"
                     /db_xref="GeneID:320159"
                     /db_xref="MGI:MGI:2443498"
     exon            1..239
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            240..378
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     CDS             351..3359
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /note="protein FAM179A; crescerin-2; family with sequence
                     similarity 179, member A"
                     /codon_start=1
                     /product="TOG array regulator of axonemal microtubules
                     protein 2"
                     /protein_id="NP_796061.2"
                     /db_xref="CCDS:CCDS28961.2"
                     /db_xref="GeneID:320159"
                     /db_xref="MGI:MGI:2443498"
                     /translation="MDTRDDVTLAKVPAPVAVYCGSVPRTSVGLRAPPPGGIDSSLLA
                     HDEASLQPVSSVLPSSEKPSQLSREHEDQSSLMLNAPLKGWQARNGYPRGLGVLPLGH
                     HLGAAIPSLESEASSVARDTIQIKDKLKKRRLSEGMAASSQASLDPVGGPRGVPLRST
                     IPRTTSQRLLRVPRPMPPIQSIPTTPEANSAKEKDLDPPGGRQDLQDPGASAQEVQIS
                     RQYLHCADEKMHKSLGGLVIPPIPKARMPTGTSSCRPGSLPSPLCPSQDVLMGPKAPH
                     TRLTCENGPLEKTPKSPASKPLVPVVKAKSAEAPETSLASSQSTFTLTAFSSHAKETR
                     SLENEEDQKESSTKVQVTISKSAQEKMRLKQMKEMELLRRAKEPEWERELVSQGLGTR
                     RTSAKEGLLPLRGSGALSEPAGMSSPRRNNMGALQRKRANRASLPSIPVSKQEPGFAR
                     HASANSLPAVLTLGSPEWEEEEEEMDLRALRELRPFSNPELGLTDALQCLNSNDWQMK
                     EKGLVNIQRLAACHSEVLGTRLHDVSLAVTAEVTNLRSKVSRLAISTLGDLFRVLKKN
                     MDQEAEEIVRCLLQKMGNTSEFIQRAANRALGAMVENVTPARALVALTSAGVYHRNPL
                     VRKCTAKHLSAVLEQIGAEKLLSGSRDNTDMLVHNLVRLAQDSNQDTRFYGRKMVNIL
                     MANAKFDAFLKQSLPSHDLRKVMAAIKQRGIQDNHELQSAKGRKVSKSLVVCENGLPS
                     HEGVETSEQLRELTRLLEAKEFQARMEGVGKLLEYCKAKPELVAANLVQVFDVFTPRL
                     HDSNKKVNQWALESLAQMLPILKESIHPMLLSLIIAAADNLNSKNSGISTAASTVLDA
                     MMGSLDHLCLLQAFAGRVRFLTGPAVLDITDRLSVLVASVYPRKPQAVERHILPVLWY
                     FLNKMSGNGVLPGRGGNVRTAVCRLARSLQEQMGSRLQDFAASQPQQVLKALQGLLAS
                     ESLGANDKVIGGRMAPDIQMTGTTCPQQLD"
     exon            379..492
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            493..780
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            781..992
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            993..1183
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1230
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1394
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1545
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1710
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            1711..1864
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            1865..1970
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            1971..2206
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            2207..2365
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            2366..2483
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            2484..2578
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            2579..2717
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            2718..2934
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            2935..3021
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     exon            3022..3503
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3480..3485
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /note="putative"
     polyA_site      3503
                     /gene="Togaram2"
                     /gene_synonym="4632412N22Rik; Fam179a"
                     /note="putative"
ORIGIN      
        1 gtttattcaa gaggagcctg gcagagagca ggagtgtgcc agccgcggct gtgggctttc
       61 ttgtacctgc ttggacagaa ggccgtggcc taggcctcct aagctggccc tgggccaagg
      121 caggccaggt gggtgatgcc ctacccttgc ctccctctgt gcagggacag cattgtttcc
      181 agagagacta aggaccctgg attcctccac tgacagggga ttggcctctg gatggagagg
      241 gccctggatg tcacagacca gcatcctttg gacccctgag gcctgcactc agggcccagg
      301 gacaaccgct acctccaggc aacctggtgg gcaccttccc cacctggggc atggacaccc
      361 gtgacgatgt cactctagcc aaagttccgg ctccagtggc tgtgtactgt gggagtgtcc
      421 ctcggactag tgttgggctc cgagcgcccc cacctggagg catcgactcc agtcttcttg
      481 ctcacgatga agcctctttg cagccagtgt caagtgtact gccaagcagt gagaagccat
      541 cacagctctc aagggaacat gaggaccaga gtagtctcat gctgaatgct cctctgaaag
      601 gctggcaggc caggaatggc taccccaggg gccttggagt tctgcccttg gggcaccacc
      661 tgggggcagc tattccctcc ctggaatcag aggccagcag tgtggcccgg gacacgatcc
      721 agattaagga caaactcaag aagagacggc tctcagaagg catggcggca tcttctcaag
      781 cctctctgga tccggtggga ggccccagag gggttcctct gcggagcaca atcccccgca
      841 ccacctcaca gaggctcctg agggtaccca ggccgatgcc tcccatccag agcattccca
      901 ccacccctga ggccaacagt gctaaggaga aggacctgga ccctcctgga ggcagacagg
      961 atctccagga cccgggagcc agtgcccagg aggtgcagat ttccaggcaa tacttacact
     1021 gcgctgatga gaagatgcac aagtctttag gaggcctcgt gatcccaccc attccgaagg
     1081 cccggatgcc cacagggacc tcttcctgca ggcctggctc cttgcccagc cccctgtgtc
     1141 caagccagga tgtgcttatg ggaccaaagg ccccacatac gcgattgact tgtgagaatg
     1201 ggcctctgga aaagacccct aaatctccgg cgtcaaagcc tttggttcca gttgtcaagg
     1261 ccaagtctgc tgaagccccc gaaacgtccc tggcttcgtc acagtctacc tttactctga
     1321 cagcattctc cagtcatgcc aaagaaaccc gctccctgga gaacgaagaa gaccagaagg
     1381 agtccagcac caaggtccaa gtcaccattt ccaagtctgc ccaggaaaag atgaggctga
     1441 agcagatgaa ggagatggag ctgcttcgga gggcaaagga gccagagtgg gagcgagaac
     1501 tggtttccca gggcttaggc acacggagaa cctcagcaaa ggaaggcctc cttcctttgc
     1561 ggggcagtgg agcactgtcc gagcctgctg ggatgagcag cccacgcaga aacaacatgg
     1621 gagccctcca gagaaaacgg gctaaccgag cctccctgcc cagcatcccg gtcagcaagc
     1681 aggagcctgg ctttgcccgc catgcatcag ctaactcact acctgccgtg cttaccttgg
     1741 gctcccctga gtgggaggaa gaggaggagg agatggatct tcgggctctc agggagttga
     1801 ggcccttctc caacccggaa ctggggctga cagatgccct ccagtgcctc aacagcaatg
     1861 actggcaaat gaaggagaag ggcctggtga acatccagcg cctggcagct tgtcactcgg
     1921 aggtcctcgg tacacggctg cacgatgtgt ccttggcagt gactgcggag gtcaccaacc
     1981 tccgttccaa ggtatcccgc ctggccatca gcaccctggg agacctcttc cgagttttga
     2041 agaagaacat ggaccaggag gctgaggaga ttgtccgctg ccttctgcag aagatgggga
     2101 acaccagcga gttcattcag cgggcagcca accgggctct gggtgccatg gtggaaaacg
     2161 tgacccctgc ccgtgcactg gtggccctca catctgcggg tgtctaccac cggaaccccc
     2221 tagtccggaa atgtacagcc aagcatctct cggccgtcct ggagcagatc ggggcagaga
     2281 agcttctctc cggctccaga gacaacacag acatgctggt gcacaacttg gtgaggttgg
     2341 cccaggactc taaccaagac accaggtttt atggccggaa gatggtgaat atcttgatgg
     2401 ccaatgcaaa gtttgatgca ttcctgaagc aatctctccc atctcatgac ctacggaaag
     2461 tcatggcagc catcaaacaa cggggaatcc aagacaatca cgaactccaa tctgccaaag
     2521 gtcgaaaggt gtcaaagagt ctggtggtgt gtgagaacgg gctgcctagt catgagggtg
     2581 tggagacgtc agagcagctg cgggagctga ccaggctgtt ggaggccaag gagttccagg
     2641 ctcggatgga aggcgttggg aagctccttg agtactgcaa ggccaagcca gagctcgtgg
     2701 ctgccaacct agtccaggtc tttgatgttt tcaccccaag gcttcacgat tccaacaaga
     2761 aagtgaacca gtgggcgctg gagtccctcg cacagatgct tcccatcctg aaagagagca
     2821 tccaccccat gctgctgtcc ctcatcatcg ctgctgcaga caaccttaac tctaagaact
     2881 ctgggatttc caccgctgcc tccaccgtac tggatgccat gatgggcagc ctggaccacc
     2941 tttgcctcct gcaagcgttt gctgggcgcg tgcgtttcct gacaggtcct gcagtgctgg
     3001 atatcacaga tcgcctctca gtgctggttg cctcagtgta tccccggaag cctcaggctg
     3061 tggaacggca tatccttcca gtcctctggt acttcctgaa caaaatgagc ggcaatggcg
     3121 tgctgcccgg gcgtggcggg aacgtccgca cagcggtgtg caggctggcc aggagcctgc
     3181 aggagcaaat ggggtcccgc ctgcaggact tcgctgccag tcagccccag caagtcctca
     3241 aggcgctgca gggactttta gcctctgaat ctctgggggc caacgacaag gtcataggtg
     3301 gaagaatggc ccctgacatc cagatgactg gaaccacctg tccccagcag ctggattaaa
     3361 gttgggtctg aaatgggcaa ttcttatttt ttaccttatt ttatttttgt agtggagtca
     3421 ccacatgacc tacttttccc gttagggtcc ccaatgtata tagtatattt taaagtagaa
     3481 ataaaagaat tgcttatttt tct
//
