LOCUS       NM_028075               1952 bp    mRNA    linear   ROD 17-AUG-2024
DEFINITION  Mus musculus tumor necrosis factor receptor superfamily, member 13c
            (Tnfrsf13c), transcript variant 1, mRNA.
ACCESSION   NM_028075
VERSION     NM_028075.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1952)
  AUTHORS   Mockel,T., Boegel,S. and Schwarting,A.
  TITLE     Transcriptome Analysis of BAFF/BAFF-R System in Murine Nephrotoxic
            Serum Nephritis
  JOURNAL   Int J Mol Sci 25 (10), 5415 (2024)
   PUBMED   38791453
  REMARK    GeneRIF: Transcriptome Analysis of BAFF/BAFF-R System in Murine
            Nephrotoxic Serum Nephritis.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1952)
  AUTHORS   Ullah,M.A., Garcillan,B., Whitlock,E., Figgett,W.A., Infantino,S.,
            Eslami,M., Yang,S., Rahman,M.A., Sheng,Y.H., Weber,N.,
            Schneider,P., Tam,C.S. and Mackay,F.
  TITLE     An unappreciated cell survival-independent role for BAFF initiating
            chronic lymphocytic leukemia
  JOURNAL   Front Immunol 15, 1345515 (2024)
   PUBMED   38469292
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1952)
  AUTHORS   Mockel,T., Boegel,S. and Schwarting,A.
  TITLE     Transcriptome analysis of renal ischemia/reperfusion (I/R) injury
            in BAFF and BAFF-R deficient mice
  JOURNAL   PLoS One 18 (9), e0291619 (2023)
   PUBMED   37751458
  REMARK    GeneRIF: Transcriptome analysis of renal ischemia/reperfusion (I/R)
            injury in BAFF and BAFF-R deficient mice.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1952)
  AUTHORS   Stohl,W., Yu,N. and Wu,Y.
  TITLE     B Cell and T Cell Dissimilarities in BAFF-Deficient versus
            BR3-Deficient C57BL/6 Mice
  JOURNAL   J Immunol 209 (11), 2133-2140 (2022)
   PUBMED   36426969
  REMARK    GeneRIF: B Cell and T Cell Dissimilarities in BAFF-Deficient versus
            BR3-Deficient C57BL/6 Mice.
REFERENCE   5  (bases 1 to 1952)
  AUTHORS   Rong,H.M., Zhang,C., Rong,G.S., Li,T., Qian,X.J., Wang,D. and
            Tong,Z.H.
  TITLE     Analysis of lncRNA and mRNA Repertoires in Lung From
            BAFF-R-Deficient Pneumocystis-Infected Mice
  JOURNAL   Front Immunol 13, 898660 (2022)
   PUBMED   35774783
  REMARK    GeneRIF: Analysis of lncRNA and mRNA Repertoires in Lung From
            BAFF-R-Deficient Pneumocystis-Infected Mice.
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1952)
  AUTHORS   Hoag,K.A., Clise-Dwyer,K., Lim,Y.H., Nashold,F.E., Gestwicki,J.,
            Cancro,M.P. and Hayes,C.E.
  TITLE     A quantitative-trait locus controlling peripheral B-cell deficiency
            maps to mouse Chromosome 15
  JOURNAL   Immunogenetics 51 (11), 924-929 (2000)
   PUBMED   11003386
REFERENCE   7  (bases 1 to 1952)
  AUTHORS   Hansen,G.M., Skapura,D. and Justice,M.J.
  TITLE     Genetic profile of insertion mutations in mouse leukemias and
            lymphomas
  JOURNAL   Genome Res 10 (2), 237-243 (2000)
   PUBMED   10673281
REFERENCE   8  (bases 1 to 1952)
  AUTHORS   Lentz,V.M., Hayes,C.E. and Cancro,M.P.
  TITLE     Bcmd decreases the life span of B-2 but not B-1 cells in A/WySnJ
            mice
  JOURNAL   J Immunol 160 (8), 3743-3747 (1998)
   PUBMED   9558076
REFERENCE   9  (bases 1 to 1952)
  AUTHORS   Lentz,V.M., Cancro,M.P., Nashold,F.E. and Hayes,C.E.
  TITLE     Bcmd governs recruitment of new B cells into the stable peripheral
            B cell pool in the A/WySnJ mouse
  JOURNAL   J Immunol 157 (2), 598-606 (1996)
   PUBMED   8752907
REFERENCE   10 (bases 1 to 1952)
  AUTHORS   Miller,D.J. and Hayes,C.E.
  TITLE     Phenotypic and genetic characterization of a unique B lymphocyte
            deficiency in strain A/WySnJ mice
  JOURNAL   Eur J Immunol 21 (5), 1123-1130 (1991)
   PUBMED   2037009
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC104325.28.
            
            On Nov 4, 2017 this sequence version replaced NM_028075.2.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK008142.1, AF350257.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849375,
                                           SAMN00849388 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-213               AC104325.28        73084-73296         c
            214-417             AC104325.28        72635-72838         c
            418-1952            AC104325.28        70658-72192         c
FEATURES             Location/Qualifiers
     source          1..1952
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 38.56 cM"
     gene            1..1952
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /note="tumor necrosis factor receptor superfamily, member
                     13c"
                     /db_xref="GeneID:72049"
                     /db_xref="MGI:MGI:1919299"
     exon            1..213
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..596
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /note="isoform 1 is encoded by transcript variant 1;
                     B-cell maturation defect 1; BAFF receptor; BLyS receptor
                     3; b cell-activating factor receptor; B-cell-activating
                     factor receptor"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member 13C isoform 1"
                     /protein_id="NP_082351.1"
                     /db_xref="CCDS:CCDS27684.1"
                     /db_xref="GeneID:72049"
                     /db_xref="MGI:MGI:1919299"
                     /translation="MGARRLRVRSQRSRDSSVPTQCNQTECFDPLVRNCVSCELFHTP
                     DTGHTSSLEPGTALQPQEGSALRPDVALLVGAPALLGLILALTLVGLVSLVSWRWRQQ
                     LRTASPDTSEGVQQESLENVFVPSSETPHASAPTWPPLKEDADSALPRHSVPVPATEL
                     GSTELVTTKTAGPEQ"
     exon            214..417
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /inference="alignment:Splign:2.1.0"
     exon            418..1952
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      912
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
     regulatory      1839..1844
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /note="hexamer: TATAAA"
     polyA_site      1861
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
     regulatory      1922..1927
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /note="hexamer: AATAAA"
     polyA_site      1951
                     /gene="Tnfrsf13c"
                     /gene_synonym="2010006P15Rik; BAFF-R; Baffr; Bcmd; Bcmd-1;
                     Bcmd1; Lvis22"
                     /note="major polyA site"
ORIGIN      
        1 ggtttcattc tagactacag ggcacacagc ccagactcgg aactgtccca gctgcatgag
       61 gcggcgacat gggcgccagg agactccggg tccgaagcca gaggagccgg gacagctcgg
      121 tgcccaccca gtgcaatcag accgagtgct tcgaccctct ggtgagaaac tgcgtgtcct
      181 gtgagctctt ccacacgccg gacactggac atacaagcag cctggagcct gggacagctc
      241 tgcagcctca ggagggctcc gcgctgagac ccgacgtggc gctgctcgtc ggtgcccccg
      301 cactcctggg actgatactg gcgctgaccc tggtgggtct agtgagtctg gtgagctgga
      361 ggtggcgtca acagctcagg acggcctccc cagacacttc agaaggagtc cagcaagagt
      421 ccctggaaaa tgtctttgta ccctcctcag aaacccctca tgcctcagct cctacctggc
      481 ctccgctcaa agaagatgca gacagcgccc tgccacgcca cagcgtcccg gtgcccgcca
      541 cagaactggg ctccaccgag ctggtgacca ccaagacagc tggcccagag caatagcagc
      601 agtggaggct ggaacccagg gatctctact gggcttgtgg acttcaccca acagcttggg
      661 aaagaacttg gcccttcagt gacggagtcc tttgcctggg gggcgaaccc ggcagaacca
      721 gacactacag gccacatgag attgcttttg tgttagctct tgacttgaga acgttccatt
      781 tctgagatgg tttttaagcc tgtgtgcctt cagatggttg gatagacttg agggttgcat
      841 atttaatctc tgtagtgagt cggagactgg aaacttaatc tcgttctaaa aattttggat
      901 tactgggctg gaggtatggc tcagcagttc ggtttgtgtg ctgttctagc cgaggactcc
      961 agttgttcag cttcccggaa ctcagatctg gcagcttaag accacctgtc actccagccc
     1021 ctggaacatc cttgcctcca aaggcaccag cactcatttg ctctagagca cacacacaca
     1081 cacacacaca cacacacaca cacacacaca catatgcatg catgcacact taaaaatgtc
     1141 aaaattagcg gctggagaaa ttcatggtca acagcgctta ctgtgattcc agaggatgag
     1201 agtttgattc ccagaatgca ctgcgggtgg ctcattactg agcataactt ttgcttcagg
     1261 ggacctgatg cctctggact tcatgggcat ctgtattcac gtgcacatcc tacacacaca
     1321 cacacacaca cacacagaca tacacacaca cacactcttt tacaaatgat aaaatataag
     1381 atgggcatgg tggtacacac ctttaatccc aacattgggg aagcaaaggc aggcaggtaa
     1441 ctgagttgga ggccatcctg gtctacatag caagttccag gctaaccaga gctaaatggt
     1501 gagaccaagt ctcaaaataa tactcccccc cccaaaaaaa aaacttttaa attttgattt
     1561 ttttctttta ttattatttt ttatattaat ttcatggtgt ttagaagtgg tatacttaga
     1621 tggtgactaa gaggaggtaa agccatcagg actgagcccc taacatacaa ggagaaagca
     1681 gagacaatga acacgcccct ctcctgctgt gtgccagctc tggaccacca gccagagggc
     1741 aatcatcaga tgtgggccct agaaccttca gagccgaaag ctaaatcaat ctcatttctt
     1801 tgtaaagcta tttagcctta ggtgttttgt tacggtgata taaaatggac taacacaggc
     1861 actatgagta agaagctttt ctttgagctg ggaaaggtac tgttaaacca aaattaatct
     1921 gaataaaaaa aggctaaggg gaagacactt ac
//
