LOCUS       XM_006519511            3412 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transmembrane and tetratricopeptide repeat
            containing 4 (Tmtc4), transcript variant X2, mRNA.
ACCESSION   XM_006519511
VERSION     XM_006519511.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006519511.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..3412
                     /gene="Tmtc4"
                     /gene_synonym="4930403J22Rik; 5730419O14Rik"
                     /note="transmembrane and tetratricopeptide repeat
                     containing 4; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 19 ESTs, 324 long SRA
                     reads, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 38 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:70551"
                     /db_xref="MGI:MGI:1921050"
     CDS             166..2388
                     /gene="Tmtc4"
                     /gene_synonym="4930403J22Rik; 5730419O14Rik"
                     /codon_start=1
                     /product="protein O-mannosyl-transferase TMTC4 isoform X2"
                     /protein_id="XP_006519574.1"
                     /db_xref="GeneID:70551"
                     /db_xref="MGI:MGI:1921050"
                     /translation="MVELDADLDHIVPSVLPPFWAKLVVGFVSLLCFARSYDGDFVFD
                     DSEAIVNNKDLQSDTPLGDLWHHDFWGSKLSSNTSHKSYRPLTVLTFRINYYLSGGFH
                     PVGFHVVNILLHGSISILMLDVFSVLFGGLQYTGKGQRVHLAPRASLLATLLFAVHPV
                     HTECVAGVVGRADLLCALFFLLSFLGYCQAFKESNKEGTHSSTFWVLLSIFLGAVAML
                     CKEQGITVLGLNAVFDILVIGKLDILAAVRKVLHKDKSQENAGMFKNGGLLFRIALLT
                     IGGTSMLYIRWKIMGTGPPAFTEVDNPASFADSMLVRAINYNYYYSLNAWLLLCPWWL
                     CFDWSMGCIPLIKSVGDWRVIALAALWLCLIGLIFQALCSEDSCKRRILTLGLGFLVI
                     PFLPASNLFFRVGFVVAERVLYLPSAGYCVLLTFGFGALSRHTKKKKPVAAIILGILL
                     INALRCVIRSGEWRSEEQLFRSALSVCPLNAKVHYNIGKNLADQGNQTAAIKYYREAV
                     RLNPKYVHAMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFE
                     EAEQSYRTAIKHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMI
                     ILLDNTGNLAQAEAVGREALQLIPNDHSLMFSLANVLGKSQKYKESEALFLKAIKANP
                     NVASYHGNLAVLYHRWGHLDSAKKHYEISLQLDPVAVGTKENYSLLRRKLEQTQKKDV
                     "
ORIGIN      
        1 gcggggtggg agtgggaggg cagcccctcc cctggcggcg gcgggctggg gagccgccgg
       61 agtttaagca cgcgggaggg gagatgagat cgcggctcgt gctccttgca gatttctaac
      121 gagcgtaatg ctggagcagg tggctgtcgg cctgcagatt tcaagatggt tgagctggat
      181 gctgacttgg atcacattgt cccatccgtc cttccccctt tctgggctaa gttagtagtg
      241 ggatttgttt cccttctgtg ttttgcaagg agctatgatg gcgattttgt ctttgatgac
      301 tctgaagcta ttgttaacaa taaggacctc cagtcagaca cgccccttgg ggacctgtgg
      361 caccatgact tctggggcag taaattgagc agtaacacca gccacaagtc ctaccggcca
      421 cttactgtcc tgactttcag gattaactac tacctgtccg gaggctttca ccccgtgggt
      481 ttccatgtgg tcaacatcct cctgcatggc agcatctcca tcctcatgct ggatgtcttc
      541 tcagtactgt ttggtggcct acagtacacc ggtaaaggcc agagggtaca cctggccccc
      601 agggcttccc tgctggccac gttgctgttt gctgtccatc cagtgcacac tgagtgtgtt
      661 gctggtgttg ttggccgtgc agacctcctg tgtgccctgt tcttcttgtt gtctttcctt
      721 ggctactgtc aagcatttaa agaaagtaac aaggagggaa cacattcttc caccttctgg
      781 gtattgctga gtatctttct gggagctgtg gccatgctgt gcaaagagca aggaatcact
      841 gtgctgggct tgaatgctgt gttcgatatc ctggtgatag gcaaactcga cattctggca
      901 gctgtccgga aggtcctaca taaggacaag tcacaagaga atgcaggcat gttcaagaat
      961 ggaggcctcc ttttccgaat agccctactt accattggag gcaccagcat gctttatata
     1021 cgctggaaaa tcatgggaac aggcccaccg gcatttactg aggtggacaa cccagcatcc
     1081 tttgctgaca gcatgttggt tagggccata aactataatt actactattc attgaatgcc
     1141 tggctgctgc tgtgtccctg gtggctgtgt tttgattggt caatgggctg catccccctc
     1201 attaagtcag ttggtgactg gagggtaatt gctctagcgg cactttggct ctgcctaatt
     1261 ggcctaatat tccaagccct gtgctctgag gatagctgca agagaagaat ccttactctg
     1321 ggtttgggat ttcttgtgat cccctttctt cctgcaagca acttgttttt ccgagtgggc
     1381 tttgtggtcg cagaacgtgt cctctacctt cccagcgctg ggtactgcgt gctgctgacc
     1441 tttggatttg gagctctgag cagacacact aagaaaaaga aacctgttgc cgccatcatc
     1501 ctgggcatcc ttctcatcaa tgcactgaga tgtgtgatac gcagtggtga gtggcggagt
     1561 gaagagcagc tctttcgaag cgccctgtct gtgtgtcccc tcaatgctaa ggttcactac
     1621 aacattggca aaaacctggc tgatcaaggc aaccaaacag cggccatcaa atattaccgg
     1681 gaagcagtca gactaaatcc caagtacgtt catgccatga ataacctcgg gaatatctta
     1741 aaagaaagga atgagctaca ggaagctgaa gagctgctgt cgttggctgt ccaaatacag
     1801 ccagactttg cagccgcatg gatgaatttg ggcatagttc agaacagcct gaaacggttt
     1861 gaggaagcag agcagagcta ccggacagcg attaaacaca ggaggaaata cccagactgc
     1921 tactacaacc tcgggcggct gtatgcagat ctaaatcgcc acgtggatgc attgaacgct
     1981 tggagaaatg ccaccgtact gaagccggag cacagcctgg cgtggaacaa catgatcata
     2041 cttctggata acacaggtaa cttagcccag gctgaagctg ttggaagaga ggccctgcaa
     2101 ttaataccta atgatcactc ccttatgttc tcattggcaa acgtgctggg gaaatcccag
     2161 aaatacaagg agtctgaagc tttattcctc aaggcaatta aagcaaatcc aaatgttgca
     2221 agttaccatg gtaatttggc tgtgctttat catcgctggg gacatcttga ctctgccaag
     2281 aaacactatg agatctcctt gcagcttgac cctgtggcag taggcaccaa ggagaattac
     2341 agtcttctga gaagaaagct agaacaaacg cagaagaaag atgtctgatc ttccccctaa
     2401 tgttttgagt ttgtgagtgt gtgcatgaag cctctgttca gattgtgtgt ttagtcattt
     2461 aaaagtctca gacatttatt ttattctatt gttatttttt tcctatgaaa acaaacacat
     2521 gcaaaaagat tatagcacca gcaatacact cttgaatgct tgataggatt tttgcattga
     2581 aattgtattt tttcacacaa ctcaaatgta attctaaaat ctcaaaaaaa aagaaacctt
     2641 tttttaaaaa ctaaacagaa aaaaatatta ttttgagtga attttgattg tgttaaactg
     2701 catttgggat gtgatggagt gacttagaca tgcctcctac aatttacata gccatctacc
     2761 gttatctgta tattagcttg tttatttaat gacaagaaag agtaaatcag gtttgggttt
     2821 ttttttaagt ctctttgcaa cagtgtaact tgaagtttgt aagaaaatta tttattcaca
     2881 tttttgtgtt gaacaggata aataattgaa gaagggaaaa ttttaatgtc tatatattta
     2941 tctatatatt tttttcatag gaagttatgg actcccatgc ttttttgata tgtatatgta
     3001 ttctccaatg tgtgtgatgt tagtatgcag gataatattc cactgttaat agagtacccc
     3061 tgacgtactt taggcaacct aacatcctgg tctctgttct gtccactgtt cagagggcta
     3121 cctgtgtgta tatgctgtgt tttcatgttt tagttgtaaa gtgggtttcc atctcacatg
     3181 ataaaatcac agacattact ctatccagaa aatgcaaaaa ggttctcttt caaaagaagt
     3241 catagctctg gattgtgtgc tgttcttata aactgggttt gtttttcctt ttcacattag
     3301 atctcaacaa tttgtttact tagtttgttc tttatatact gttgacctaa taatttatgc
     3361 catcgctgtc atttcttatg cagtaaaatt atcacacaaa ctgtcatgaa aa
//
