LOCUS       XM_036166271            3184 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transmembrane and tetratricopeptide repeat
            containing 1 (Tmtc1), transcript variant X2, mRNA.
ACCESSION   XM_036166271
VERSION     XM_036166271.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3184
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..3184
                     /gene="Tmtc1"
                     /gene_synonym="Arg99"
                     /note="transmembrane and tetratricopeptide repeat
                     containing 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 25 ESTs, 25 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:387314"
                     /db_xref="MGI:MGI:3039590"
     CDS             476..3145
                     /gene="Tmtc1"
                     /gene_synonym="Arg99"
                     /codon_start=1
                     /product="protein O-mannosyl-transferase TMTC1 isoform X2"
                     /protein_id="XP_036022164.1"
                     /db_xref="GeneID:387314"
                     /db_xref="MGI:MGI:3039590"
                     /translation="MLVTRGDRGGGERAPSRRPRCGLVPAGAAALLAGASCLCYGRSL
                     RGEFVHDDVWAIVNNPDVRPGTPLRWAIFANDFWGKGLADSTSHKSYRPLCVLSFRLN
                     IFLTGMNPFYFHAVNVILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPVHTEAV
                     AGIVGRADVLACLLFLLAFLSYQRSLDQGCAGQCFPTTASPFFLLLSLFLGTCAMLVK
                     ETGITVFGVCLVYDLFSPSHKQDKLSNGAVCQHSSGQPGSPQPSSQQAHPHRESRKQR
                     FPHKDSWGGCHSPLPPEPKSSGFPMSPRAMWSLMRCLTGSTNRNFLLTLRPFLKRAIL
                     VISYVTVILYFRLWIMGGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPI
                     TLCYDWQVGSIPLVETIWDVRNLATILLAVVMALLSLHCVAAFKRLEHKEVLAGLLFL
                     VFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLCAGLSRCGATSLMASTV
                     LLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHY
                     RTALKLYPRHASALNNLGTLTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKT
                     EEAIMLLKESIKYGPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNY
                     AVFLVDSGFPEKAVAHYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKVA
                     RTAEVLSPLGALYYNTGRHKEALEVYREAVSLQPSQRELRLALAQVLAVMGQTKEAEK
                     ITSHIVSEEPRCLECYRLLSAIHSKQEHHGKALEAIEKALQLKPKDPKVISELFFTKG
                     NQLREQNLLDKAFEWLSPLRLSMRTGVCAALQH"
ORIGIN      
        1 gtacctgaca agcctgccga tttgcggccg ggaggcggcg gggacctgcc cctccgcagc
       61 tgagaccggc tggggactgg tctgggaaag cagttgggcg tacccggtgg gaccctgggt
      121 ggccttcccg cgtgtcccct caagccctgc ggcgacccgc taaacctgcg cgctctggct
      181 gtcccggact cagcgccagc tggtagaggc caggtgttgg ggacctcagg tcccaggatc
      241 caggaggcgg aggcgcgcaa gcgggcatgc gcagagtggg cggaggcggc ggcgatggcc
      301 cggggaggcg gggggatcgc tgtttatttg cagctgggcc accgcggcgg cagagcaccg
      361 ggcgcccggg cggggacagt gggcgtgcga tgcctgagcc aagcaggccg ctgcgcgccc
      421 gggtcccggc cggggaggat gcgcgctgcg cgggagcggc cgtgcgggcg gtgcgatgct
      481 ggtgacccgc ggggaccgcg gcggcgggga gcgcgcgccc tcgcggcgcc cgcgctgcgg
      541 gctggttcca gcgggggccg cggcgctgct agctggggcc agctgccttt gctacggccg
      601 ctcgctgcgg ggcgagtttg tacacgacga tgtgtgggcg atcgtgaaca accccgacgt
      661 gcggcccggg acaccgctgc gctgggccat cttcgctaac gacttctggg gcaagggcct
      721 ggcggacagc accagccaca agtcctatcg gccactgtgc gtgctgtcct tcaggctaaa
      781 catatttctg actggcatga accctttcta cttccacgcg gtcaatgtca ttctacactg
      841 cctggtgacc cttgtgctga tgtatacctg tgataaaaca gtcttcaaga atcgcggact
      901 ggcgtttgtc acagctttgc tctttgcggt gcacccagtc cacactgagg cggtggctgg
      961 catcgtgggc agagctgatg tactagcatg cctcctgttc ctgctggcct ttctttccta
     1021 ccaaaggagt ctggatcagg gctgtgcagg gcagtgcttc cccacaacgg cttccccctt
     1081 cttcctgctg ctcagtttgt ttctggggac ctgtgccatg ctggtgaagg agacaggcat
     1141 caccgtgttt ggagtgtgct tggtttatga tctcttctct ccctcccaca agcaggacaa
     1201 gttgagcaat ggggcggtct gtcagcacag ctctgggcag ccagggagcc cccagccttc
     1261 ctctcagcaa gcccaccccc accgtgagag cagaaagcag cgcttcccac acaaagactc
     1321 ctggggaggc tgccattcac cattgccacc agagcccaag agcagtggat tccccatgtc
     1381 gccgagagct atgtggtctc tgatgaggtg tctgactggg agcaccaaca gaaatttcct
     1441 tcttaccttg agaccgtttt taaagcgggc cattttggtc atcagttatg tgactgtcat
     1501 tttgtatttc cgcctgtgga taatgggagg aactatgccc ctcttctcag agcaagacaa
     1561 tccagcttca ttctcgccat acatccttac aaggttcctt acctattcct acctcctggc
     1621 cttcaatgta tggcttctgc tggcacccat cactctgtgc tacgactggc aagtgggaag
     1681 tatccctctg gtggagacca tatgggatgt gaggaacctt gctaccatcc ttctggcagt
     1741 ggtgatggcc ttactgagcc tgcactgtgt ggcagccttc aagaggctgg agcacaagga
     1801 agtattggcc ggcttgctgt tcctcgtgtt cccgttcatt ccagccagca acctattctt
     1861 cagggtgggc tttgtggtgg ccgagagagt cctgtacatg cctagcatgg gctactgcat
     1921 tctgtttgtg catggactga gtaagctctg tgctgggctg agccggtgcg gggccacctc
     1981 cctgatggcg tccactgtgt tgcttctgct gctgttctcc tggaagactg tgaagcagaa
     2041 tgaaatctgg ctgtcgagag agtccttatt caggtctgga gttcagactc taccccacaa
     2101 tgccaaggtt cattacaact acgccaattt cctaaaagac caaggtcgga acaaggaagc
     2161 gatctaccac tacagaaccg ccctcaagct gtacccacgc cacgcaagtg cactgaacaa
     2221 ccttgggaca ctgaccaagg acatggcaga agctaagatg tactaccaga aggcattgca
     2281 gctccacccg cagcacaacc gtgcactttt caatctgggg aatctcctca agtcccagga
     2341 gaagacagaa gaagccatca tgctgctgaa ggaatccatt aaatatggtc cagattttgc
     2401 tgatgcctat tcaagcttgg cttccctact ggcggagcag gaaagattta aggaagctga
     2461 ggacatttac caggctggaa taaagaactg tccggacagc tcagacttac acaacaacta
     2521 tgcagttttc ttagttgact ctggctttcc tgagaaggct gtggctcact accagcaggc
     2581 catccagctc agcccaagcc atcatgtggc tgtggtgaac ctaggccgac tctacaggtc
     2641 cctgggagag aacagcaagg ctgaagagtg gtacagacgt gccctgaagg tggcccgcac
     2701 ggctgaggta ctgtcacctc tgggagcgct ctattacaac actggccgac acaaggaggc
     2761 actggaggtg tacagggaag ctgtctcact ccagccttcc cagagggagc tccgcctggc
     2821 tctggcacag gttttagcag tgatgggtca gaccaaagaa gctgaaaaga taaccagcca
     2881 tatagtctct gaggagccca ggtgcctgga gtgctaccgc ctcctgtcag caatccacag
     2941 caagcaggag caccatggga aggcactcga ggccatagag aaggctcttc aactgaagcc
     3001 caaggaccca aaagtcatat ctgaactatt ctttacaaaa ggaaaccagc taagagaaca
     3061 gaaccttctg gacaaagctt ttgagtggct gtcacctctc aggctctcca tgcgcacagg
     3121 ggtctgcgca gctctgcagc actgaggacg cgtctccagc cctaacgtga agctttcctt
     3181 cctt
//
