LOCUS       XM_011241620            3476 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transmembrane and tetratricopeptide repeat
            containing 1 (Tmtc1), transcript variant X6, mRNA.
ACCESSION   XM_011241620
VERSION     XM_011241620.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011241620.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3476
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..3476
                     /gene="Tmtc1"
                     /gene_synonym="Arg99"
                     /note="transmembrane and tetratricopeptide repeat
                     containing 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 ESTs, 22 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:387314"
                     /db_xref="MGI:MGI:3039590"
     CDS             477..2543
                     /gene="Tmtc1"
                     /gene_synonym="Arg99"
                     /codon_start=1
                     /product="protein O-mannosyl-transferase TMTC1 isoform X6"
                     /protein_id="XP_011239922.1"
                     /db_xref="GeneID:387314"
                     /db_xref="MGI:MGI:3039590"
                     /translation="MLVTRGDRGGGERAPSRRPRCGLVPAGAAALLAGASCLCYGRSL
                     RGEFVHDDVWAIVNNPDVRPGTPLRWAIFANDFWGKGLADSTSHKSYRPLCVLSFRLN
                     IFLTGMNPFYFHAVNVILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPVHTEAV
                     AGIVGRADVLACLLFLLAFLSYQRSLDQGCAGQCFPTTASPFFLLLSLFLGTCAMLVK
                     ETGITVFGVCLVYDLFSPSHKQDKLSNGAVCQHSSGQPGSPQPSSQQAHPHRESRKQR
                     FPHKDSWGGCHSPLPPEPKSSGFPMSPRAMWSLMRCLTGSTNRNFLLTLRPFLKRAIL
                     VISYVTVILYFRLWIMGGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPI
                     TLCYDWQVGSIPLVETIWDVRNLATILLAVVMALLSLHCVAAFKRLEHKEVLAGLLFL
                     VFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLCAGLSRCGATSLMASTV
                     LLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHY
                     RTALKLYPRHASALNNLGTLTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKT
                     EEAIMLLKESIKYGPDFADAYSSLASLLAEQSASLTGPKFTLLDTLASWEKTACIPRD
                     HVFSSP"
ORIGIN      
        1 agtacctgac aagcctgccg atttgcggcc gggaggcggc ggggacctgc ccctccgcag
       61 ctgagaccgg ctggggactg gtctgggaaa gcagttgggc gtacccggtg ggaccctggg
      121 tggccttccc gcgtgtcccc tcaagccctg cggcgacccg ctaaacctgc gcgctctggc
      181 tgtcccggac tcagcgccag ctggtagagg ccaggtgttg gggacctcag gtcccaggat
      241 ccaggaggcg gaggcgcgca agcgggcatg cgcagagtgg gcggaggcgg cggcgatggc
      301 ccggggaggc ggggggatcg ctgtttattt gcagctgggc caccgcggcg gcagagcacc
      361 gggcgcccgg gcggggacag tgggcgtgcg atgcctgagc caagcaggcc gctgcgcgcc
      421 cgggtcccgg ccggggagga tgcgcgctgc gcgggagcgg ccgtgcgggc ggtgcgatgc
      481 tggtgacccg cggggaccgc ggcggcgggg agcgcgcgcc ctcgcggcgc ccgcgctgcg
      541 ggctggttcc agcgggggcc gcggcgctgc tagctggggc cagctgcctt tgctacggcc
      601 gctcgctgcg gggcgagttt gtacacgacg atgtgtgggc gatcgtgaac aaccccgacg
      661 tgcggcccgg gacaccgctg cgctgggcca tcttcgctaa cgacttctgg ggcaagggcc
      721 tggcggacag caccagccac aagtcctatc ggccactgtg cgtgctgtcc ttcaggctaa
      781 acatatttct gactggcatg aaccctttct acttccacgc ggtcaatgtc attctacact
      841 gcctggtgac ccttgtgctg atgtatacct gtgataaaac agtcttcaag aatcgcggac
      901 tggcgtttgt cacagctttg ctctttgcgg tgcacccagt ccacactgag gcggtggctg
      961 gcatcgtggg cagagctgat gtactagcat gcctcctgtt cctgctggcc tttctttcct
     1021 accaaaggag tctggatcag ggctgtgcag ggcagtgctt ccccacaacg gcttccccct
     1081 tcttcctgct gctcagtttg tttctgggga cctgtgccat gctggtgaag gagacaggca
     1141 tcaccgtgtt tggagtgtgc ttggtttatg atctcttctc tccctcccac aagcaggaca
     1201 agttgagcaa tggggcggtc tgtcagcaca gctctgggca gccagggagc ccccagcctt
     1261 cctctcagca agcccacccc caccgtgaga gcagaaagca gcgcttccca cacaaagact
     1321 cctggggagg ctgccattca ccattgccac cagagcccaa gagcagtgga ttccccatgt
     1381 cgccgagagc tatgtggtct ctgatgaggt gtctgactgg gagcaccaac agaaatttcc
     1441 ttcttacctt gagaccgttt ttaaagcggg ccattttggt catcagttat gtgactgtca
     1501 ttttgtattt ccgcctgtgg ataatgggag gaactatgcc cctcttctca gagcaagaca
     1561 atccagcttc attctcgcca tacatcctta caaggttcct tacctattcc tacctcctgg
     1621 ccttcaatgt atggcttctg ctggcaccca tcactctgtg ctacgactgg caagtgggaa
     1681 gtatccctct ggtggagacc atatgggatg tgaggaacct tgctaccatc cttctggcag
     1741 tggtgatggc cttactgagc ctgcactgtg tggcagcctt caagaggctg gagcacaagg
     1801 aagtattggc cggcttgctg ttcctcgtgt tcccgttcat tccagccagc aacctattct
     1861 tcagggtggg ctttgtggtg gccgagagag tcctgtacat gcctagcatg ggctactgca
     1921 ttctgtttgt gcatggactg agtaagctct gtgctgggct gagccggtgc ggggccacct
     1981 ccctgatggc gtccactgtg ttgcttctgc tgctgttctc ctggaagact gtgaagcaga
     2041 atgaaatctg gctgtcgaga gagtccttat tcaggtctgg agttcagact ctaccccaca
     2101 atgccaaggt tcattacaac tacgccaatt tcctaaaaga ccaaggtcgg aacaaggaag
     2161 cgatctacca ctacagaacc gccctcaagc tgtacccacg ccacgcaagt gcactgaaca
     2221 accttgggac actgaccaag gacatggcag aagctaagat gtactaccag aaggcattgc
     2281 agctccaccc gcagcacaac cgtgcacttt tcaatctggg gaatctcctc aagtcccagg
     2341 agaagacaga agaagccatc atgctgctga aggaatccat taaatatggt ccagattttg
     2401 ctgatgccta ttcaagcttg gcttccctac tggcggagca gtcagcgtcc ctcactggac
     2461 caaagtttac tctcttggat acactggcta gctgggaaaa gacagcctgc atcccccggg
     2521 atcacgtttt ctcttcaccc tgaccccttc atctctcaga gagacacacc ctgcctctgc
     2581 ctctgaccta ggtatgtcag gcacctcatt gtgcaggcat tttcttcaac caccacacat
     2641 ctctacccag atccgtcttc cctcctgccg tgcagtcgcc gcctacacag taccgtgttg
     2701 accctttgtc tactttctgt catgtctccc atcactttgt cctcctgtgt atttatttcc
     2761 tacagcttta tgttatctaa catagctcgg tgggctaatg ctctttcatc cacctccaga
     2821 atgtttgact ctgtaagggc atttattgta attattgtag tagtctcaca cctgccaggc
     2881 tgtatgcagt tagtagattc cagatgtgtg agtaaataaa cttggagagt gtgcagtccc
     2941 cacttcagtc ctctcattga gttgtgcctt attgtgatgc cctgccctgc cctgccctgc
     3001 cctgccctgc cctaccctgg ggtctagtgt gagaagcagc tgtgaggtca tagcaatcat
     3061 ctcttactcc attcattgag tttttatgac gtggcagatc ttgagagtgg gagatctgtg
     3121 cttcagtctt ggaaagactg catgtttctc ctaaattaca tttagttttt attttcttct
     3181 taatctggta catgaagatc ttgtattttc taggaaggtc aattctgtct ccccttttca
     3241 tctcacctca actggtggcc atctggactg cactgtctgc ttctctcttg tgctgttctt
     3301 acctctacat ttgccttttt cttaattcat attcagttca tgttcctgcc ttgatttcat
     3361 tatcaacaat gaggtgtgtg tgttgattgt acaaatagtt tccagctcag atcttttctt
     3421 ccagctccct aagcaggcag tagacactga attactgctc ttaaagaaaa aacacc
//
