LOCUS       XM_011241618            3520 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus transmembrane and tetratricopeptide repeat
            containing 1 (Tmtc1), transcript variant X5, mRNA.
ACCESSION   XM_011241618
VERSION     XM_011241618.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011241618.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..3520
                     /gene="Tmtc1"
                     /gene_synonym="Arg99"
                     /note="transmembrane and tetratricopeptide repeat
                     containing 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 24 ESTs, 22 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:387314"
                     /db_xref="MGI:MGI:3039590"
     CDS             526..2631
                     /gene="Tmtc1"
                     /gene_synonym="Arg99"
                     /codon_start=1
                     /product="protein O-mannosyl-transferase TMTC1 isoform X5"
                     /protein_id="XP_011239920.1"
                     /db_xref="GeneID:387314"
                     /db_xref="MGI:MGI:3039590"
                     /translation="MLVTRGDRGGGERAPSRRPRCGLVPAGAAALLAGASCLCYGRSL
                     RGEFVHDDVWAIVNNPDVRPGTPLRWAIFANDFWGKGLADSTSHKSYRPLCVLSFRLN
                     IFLTGMNPFYFHAVNVILHCLVTLVLMYTCDKTVFKNRGLAFVTALLFAVHPVHTEAV
                     AGIVGRADVLACLLFLLAFLSYQRSLDQGCAGQCFPTTASPFFLLLSLFLGTCAMLVK
                     ETGITVFGVCLVYDLFSPSHKQDKLSNGAVCQHSSGQPGSPQPSSQQAHPHRESRKQR
                     FPHKDSWGGCHSPLPPEPKSSGFPMSPRAMWSLMRCLTGSTNRNFLLTLRPFLKRAIL
                     VISYVTVILYFRLWIMGGTMPLFSEQDNPASFSPYILTRFLTYSYLLAFNVWLLLAPI
                     TLCYDWQVGSIPLVETIWDVRNLATILLAVVMALLSLHCVAAFKRLEHKEVLAGLLFL
                     VFPFIPASNLFFRVGFVVAERVLYMPSMGYCILFVHGLSKLCAGLSRCGATSLMASTV
                     LLLLLFSWKTVKQNEIWLSRESLFRSGVQTLPHNAKVHYNYANFLKDQGRNKEAIYHY
                     RTALKLYPRHASALNNLGTLTKDMAEAKMYYQKALQLHPQHNRALFNLGNLLKSQEKT
                     EEAIMLLKESIKYGPDFADAYSSLASLLAEQRPSLDQSLLSWIHWLAGKRQPASPGIT
                     FSLHPDPFISQRDTPCLCL"
ORIGIN      
        1 ttcgaatcgc tcacgcctcc agggagagag ggtgtccggg tccagactga gtacctgaca
       61 agcctgccga tttgcggccg ggaggcggcg gggacctgcc cctccgcagc tgagaccggc
      121 tggggactgg tctgggaaag cagttgggcg tacccggtgg gaccctgggt ggccttcccg
      181 cgtgtcccct caagccctgc ggcgacccgc taaacctgcg cgctctggct gtcccggact
      241 cagcgccagc tggtagaggc caggtgttgg ggacctcagg tcccaggatc caggaggcgg
      301 aggcgcgcaa gcgggcatgc gcagagtggg cggaggcggc ggcgatggcc cggggaggcg
      361 gggggatcgc tgtttatttg cagctgggcc accgcggcgg cagagcaccg ggcgcccggg
      421 cggggacagt gggcgtgcga tgcctgagcc aagcaggccg ctgcgcgccc gggtcccggc
      481 cggggaggat gcgcgctgcg cgggagcggc cgtgcgggcg gtgcgatgct ggtgacccgc
      541 ggggaccgcg gcggcgggga gcgcgcgccc tcgcggcgcc cgcgctgcgg gctggttcca
      601 gcgggggccg cggcgctgct agctggggcc agctgccttt gctacggccg ctcgctgcgg
      661 ggcgagtttg tacacgacga tgtgtgggcg atcgtgaaca accccgacgt gcggcccggg
      721 acaccgctgc gctgggccat cttcgctaac gacttctggg gcaagggcct ggcggacagc
      781 accagccaca agtcctatcg gccactgtgc gtgctgtcct tcaggctaaa catatttctg
      841 actggcatga accctttcta cttccacgcg gtcaatgtca ttctacactg cctggtgacc
      901 cttgtgctga tgtatacctg tgataaaaca gtcttcaaga atcgcggact ggcgtttgtc
      961 acagctttgc tctttgcggt gcacccagtc cacactgagg cggtggctgg catcgtgggc
     1021 agagctgatg tactagcatg cctcctgttc ctgctggcct ttctttccta ccaaaggagt
     1081 ctggatcagg gctgtgcagg gcagtgcttc cccacaacgg cttccccctt cttcctgctg
     1141 ctcagtttgt ttctggggac ctgtgccatg ctggtgaagg agacaggcat caccgtgttt
     1201 ggagtgtgct tggtttatga tctcttctct ccctcccaca agcaggacaa gttgagcaat
     1261 ggggcggtct gtcagcacag ctctgggcag ccagggagcc cccagccttc ctctcagcaa
     1321 gcccaccccc accgtgagag cagaaagcag cgcttcccac acaaagactc ctggggaggc
     1381 tgccattcac cattgccacc agagcccaag agcagtggat tccccatgtc gccgagagct
     1441 atgtggtctc tgatgaggtg tctgactggg agcaccaaca gaaatttcct tcttaccttg
     1501 agaccgtttt taaagcgggc cattttggtc atcagttatg tgactgtcat tttgtatttc
     1561 cgcctgtgga taatgggagg aactatgccc ctcttctcag agcaagacaa tccagcttca
     1621 ttctcgccat acatccttac aaggttcctt acctattcct acctcctggc cttcaatgta
     1681 tggcttctgc tggcacccat cactctgtgc tacgactggc aagtgggaag tatccctctg
     1741 gtggagacca tatgggatgt gaggaacctt gctaccatcc ttctggcagt ggtgatggcc
     1801 ttactgagcc tgcactgtgt ggcagccttc aagaggctgg agcacaagga agtattggcc
     1861 ggcttgctgt tcctcgtgtt cccgttcatt ccagccagca acctattctt cagggtgggc
     1921 tttgtggtgg ccgagagagt cctgtacatg cctagcatgg gctactgcat tctgtttgtg
     1981 catggactga gtaagctctg tgctgggctg agccggtgcg gggccacctc cctgatggcg
     2041 tccactgtgt tgcttctgct gctgttctcc tggaagactg tgaagcagaa tgaaatctgg
     2101 ctgtcgagag agtccttatt caggtctgga gttcagactc taccccacaa tgccaaggtt
     2161 cattacaact acgccaattt cctaaaagac caaggtcgga acaaggaagc gatctaccac
     2221 tacagaaccg ccctcaagct gtacccacgc cacgcaagtg cactgaacaa ccttgggaca
     2281 ctgaccaagg acatggcaga agctaagatg tactaccaga aggcattgca gctccacccg
     2341 cagcacaacc gtgcactttt caatctgggg aatctcctca agtcccagga gaagacagaa
     2401 gaagccatca tgctgctgaa ggaatccatt aaatatggtc cagattttgc tgatgcctat
     2461 tcaagcttgg cttccctact ggcggagcag cgtccctcac tggaccaaag tttactctct
     2521 tggatacact ggctagctgg gaaaagacag cctgcatccc ccgggatcac gttttctctt
     2581 caccctgacc ccttcatctc tcagagagac acaccctgcc tctgcctctg acctaggtat
     2641 gtcaggcacc tcattgtgca ggcattttct tcaaccacca cacatctcta cccagatccg
     2701 tcttccctcc tgccgtgcag tcgccgccta cacagtaccg tgttgaccct ttgtctactt
     2761 tctgtcatgt ctcccatcac tttgtcctcc tgtgtattta tttcctacag ctttatgtta
     2821 tctaacatag ctcggtgggc taatgctctt tcatccacct ccagaatgtt tgactctgta
     2881 agggcattta ttgtaattat tgtagtagtc tcacacctgc caggctgtat gcagttagta
     2941 gattccagat gtgtgagtaa ataaacttgg agagtgtgca gtccccactt cagtcctctc
     3001 attgagttgt gccttattgt gatgccctgc cctgccctgc cctgccctgc cctgccctac
     3061 cctggggtct agtgtgagaa gcagctgtga ggtcatagca atcatctctt actccattca
     3121 ttgagttttt atgacgtggc agatcttgag agtgggagat ctgtgcttca gtcttggaaa
     3181 gactgcatgt ttctcctaaa ttacatttag tttttatttt cttcttaatc tggtacatga
     3241 agatcttgta ttttctagga aggtcaattc tgtctcccct tttcatctca cctcaactgg
     3301 tggccatctg gactgcactg tctgcttctc tcttgtgctg ttcttacctc tacatttgcc
     3361 tttttcttaa ttcatattca gttcatgttc ctgccttgat ttcattatca acaatgaggt
     3421 gtgtgtgttg attgtacaaa tagtttccag ctcagatctt ttcttccagc tccctaagca
     3481 ggcagtagac actgaattac tgctcttaaa gaaaaaacac
//
