LOCUS       NM_001163172            2187 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 92 (Tmem92), transcript variant
            1, mRNA.
ACCESSION   NM_001163172
VERSION     NM_001163172.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2187)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2187)
  AUTHORS   Ko,M.S., Kitchen,J.R., Wang,X., Threat,T.A., Wang,X., Hasegawa,A.,
            Sun,T., Grahovac,M.J., Kargul,G.J., Lim,M.K., Cui,Y., Sano,Y.,
            Tanaka,T., Liang,Y., Mason,S., Paonessa,P.D., Sauls,A.D.,
            DePalma,G.E., Sharara,R., Rowe,L.B., Eppig,J., Morrell,C. and
            Doi,H.
  TITLE     Large-scale cDNA analysis reveals phased gene expression patterns
            during preimplantation mouse development
  JOURNAL   Development 127 (8), 1737-1749 (2000)
   PUBMED   10725249
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL645764.15 and BC172064.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC147511.1, CN721342.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849383,
                                           SAMN01164134 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-203               AL645764.15        200066-200268       c
            204-1640            BC172064.1         1-1437
            1641-2187           AL645764.15        194782-195328       c
FEATURES             Location/Qualifiers
     source          1..2187
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 58.94 cM"
     gene            1..2187
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /note="transmembrane protein 92"
                     /db_xref="GeneID:544806"
                     /db_xref="MGI:MGI:3034723"
     exon            1..349
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /inference="alignment:Splign:2.1.0"
     CDS             269..757
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; transmembrane protein 92, pseudogene"
                     /codon_start=1
                     /product="transmembrane protein 92 isoform 1 precursor"
                     /protein_id="NP_001156644.1"
                     /db_xref="CCDS:CCDS48890.1"
                     /db_xref="GeneID:544806"
                     /db_xref="MGI:MGI:3034723"
                     /translation="MLDTWVWGTLTLTFGLLSSLQGVSFNETANTCDILNCPKGFTCC
                     VKECCPERKVWDPANDRFRFLVILACIIFPILFICALVSLFCPNCTELQHDVRRVDHQ
                     TPIEPPSIAPLESIWVTSLDPPPPYSQVVQMTPPTEPPPPYSLRPEGPAGQMRGRAYA
                     TL"
     exon            350..372
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            373..456
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            457..655
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            656..2187
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1327..1332
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /note="hexamer: AATAAA"
     polyA_site      1346
                     /gene="Tmem92"
                     /gene_synonym="Tmem92-ps"
                     /note="major polyA site"
ORIGIN      
        1 acagtgctct cctccatcca acaaagaagg ctgcaaatca acctcttcta acctcccacc
       61 tcccagttcc tcaaactcaa gcaaggccag ctcctctcca cttctcttcc ctgagctcct
      121 gttcagcttg cagccctggt ccagccaact ccagtgtgtt aactctgggc ctatcctgag
      181 gctggcccca taggtggaga gaagtggaaa aggtcctgcc ctgtcactct gtccttacac
      241 tctgaagatc agtggacccc ttgacaggat gctggacacc tgggtctggg gcacactcac
      301 cttgaccttt ggcctgcttt ccagtctcca aggagtaagc ttcaatgaga ctgcaaacac
      361 atgtgacatc ttaaactgcc ccaaaggatt cacatgctgt gtcaaggaat gctgcccgga
      421 aagaaaggtg tgggatcctg caaatgaccg ctttaggttc ttggtcatcc tggcatgcat
      481 catttttccc attttgttca tctgtgccct agtgagtctc ttctgtccca actgcactga
      541 attacagcac gatgtcagaa gagtggatca tcagactcct atagaaccgc cctccatagc
      601 tcccctagag agcatttggg tcacctcctt ggatccacca ccaccctaca gtcaggttgt
      661 tcagatgaca cctcccacag agccacctcc tccctacagc ctcaggcctg agggccctgc
      721 tggccagatg agagggcgtg cctatgcaac cctttgagct tccttacaca catctcttgg
      781 atcaagccca ggaccctgga atgactgcct atcccatcat ctctcttgtc cttttattta
      841 attttttgtt tttattcaga taagacccct ccccttttgt cctgagagct aagctggatt
      901 catgatctcc atcccacact taagactgtt gactttttta agaactgggg ttggctgtcg
      961 tggatgtaga gacatcattg ctagtgggct gccaatcttg tctggacagc ttgctctgcc
     1021 atcctacagc agcacttctg tgcctggaag agtttgaaga ctgaactgca cagactctga
     1081 gccatcttcc aaccatgcat gggcagagag gacctcactg tccctctgta gcaatgcaga
     1141 aaacacaggg actacgtttc catagctggc tgctaagtgg ggatgagaca aggtcagagg
     1201 ctgaggaaac ccttccatct tcttccagtg gtgactgact gcactgagca cctgctggga
     1261 ggatggagca gccaagatgt gagtgaatgc atagaccttc accttcctgg gtcctcgggg
     1321 gcactgaata aagaaactgg aaagttctca ggatcctgtt ctagtcctgg gacctgcttt
     1381 cctgggcgac cagacagaac ttgattaagc atgggacact tagggagata caaaccagaa
     1441 aaccgccttc taggagaaga ttgggtggag agaaagcctg gagaagcagg tgtggtttga
     1501 gttgtgtgga gtgaggccaa ggaatacttc ctctacattc ctccgctgga ttcccctgga
     1561 aggagagggg aggtctaccc caccttcctc ttccttctgg tgagcctgtg ttccacactc
     1621 tacagctcaa ccctgcccaa agttaactcc taaagggaag aaggttttgt cctgtggctg
     1681 aggggctgag gacagcttgg agcttggact gtccagagtg ggtggggaga gtgaagacag
     1741 ttcctggtgc ccatgccttg gcaccttgcc cctctgttta ctgtgtgtgc tgcagaggga
     1801 tgaaggccaa tgtttcccct cagacagaca aaactaccaa aatcactgct taggtgtgct
     1861 ggcagggcag gtgtggctgt cctggactcc ctctgtagac caggctagct tcaaattcag
     1921 gatccccaag aaatactcat ccctgtgcca ccacagaaga ggacaggaca gggattctgg
     1981 ctagatttgg gctctgagaa ctgggctttt ccctgttgga ggaggtcacg tcagcctgcc
     2041 tgtcacctac ctgacattga agatcgttag agggctttta acacccatcc cctaaggatg
     2101 aaggatctgt cttgtcaacc tacattgtat ctgtcttacc gggagaaaag actagtgttg
     2161 tgaaataaac taaatagtta cattttt
//
