LOCUS       NM_001355629            4622 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transmembrane protein 87B (Tmem87b), transcript
            variant 3, mRNA.
ACCESSION   NM_001355629 XM_006500243
VERSION     NM_001355629.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4622)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4622)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL808104.14.
            
            On Sep 21, 2017 this sequence version replaced XM_006500243.2.
            
            Transcript Variant: This variant (3) contains an alternate in-frame
            exon and lacks another alternate in-frame exon compared to variant
            1. The resulting isoform (c) has the same N- and C-termini but is
            shorter compared to isoform a.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219379.25805.1,
                                           SRR7345562.4436143.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-201               AL808104.14        101117-101317
            202-262             AL808104.14        105897-105957
            263-357             AL808104.14        107230-107324
            358-489             AL808104.14        109071-109202
            490-540             AL808104.14        111220-111270
            541-631             AL808104.14        113324-113414
            632-693             AL808104.14        114012-114073
            694-877             AL808104.14        114264-114447
            878-977             AL808104.14        116929-117028
            978-1071            AL808104.14        120116-120209
            1072-1143           AL808104.14        123546-123617
            1144-1252           AL808104.14        124049-124157
            1253-1311           AL808104.14        124239-124297
            1312-1415           AL808104.14        125410-125513
            1416-1489           AL808104.14        128275-128348
            1490-1560           AL808104.14        129543-129613
            1561-1613           AL808104.14        131819-131871
            1614-1644           AL808104.14        133118-133148
            1645-4622           AL808104.14        134098-137075
FEATURES             Location/Qualifiers
     source          1..4622
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 62.63 cM"
     gene            1..4622
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /note="transmembrane protein 87B"
                     /db_xref="GeneID:72477"
                     /db_xref="MGI:MGI:1919727"
     exon            1..201
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            202..262
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            263..357
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            358..489
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            490..540
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            541..631
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            632..693
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            694..877
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            878..977
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1071
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1143
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1144..1252
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1253..1311
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1312..1415
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1489
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1490..1560
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1561..1613
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1614..1644
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1645..4622
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4598..4603
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4622
                     /gene="Tmem87b"
                     /gene_synonym="2610301K12Rik; 2810431I02Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggttccggg agcgcaggtg cggcgtccgc gtcaagatgg ctgccgcctg tcggtctgag
       61 gctggcctcc ttcccagcct cctctgccgc cggcccgccg gggcccagct gctgcgagtt
      121 gccctgtgtc tcctgtgctg ggtcccggcg gctgtggacg cagtccccga gctcgggctt
      181 tggacgagga cggtcaatga caaatcagga cctttggtat tcaggaaaac tatgtttaac
      241 tctactgaga tcaagttttc tgtgaagtcg ttcagttgtt ctggacctgt gaagtttacc
      301 atagagtggc atttgaagta tcatacctgt cacaatgatt accctgatct ggaggaggag
      361 ctgtcccaaa gacatgaact tcatgctgat ccagatgtct gtgcttactt caaaaacatt
      421 gactgttgga caacaaaaag tgaaaacttg gattgcagca gtgattcaca ggcatttccc
      481 tcattgaata ataaagaact aacaggtatc agaaacattt caagccagga aggatcaacg
      541 gatgttgtag ccaggaccca gaaagatggc ttccatatct tcattgtttc tattaaaacg
      601 gagaaaacag atgcagtctg ggatttaaat gtttctcttt ctatggtggg tcctcatggg
      661 tacatctctg catcagactg gcctctcatg attttttata tggtgatgtg tatcgtttac
      721 atattatatg gtgtcctctg gctgctgtgg tctgcctgtt actggaaaga tatattaaga
      781 attcagttct ggattgcagc tgttattttc ctaggaatgc ttgaaaaggc agttttttat
      841 agtgaatacc aaaacatcaa cagcactgga ctgtcaactc aaggtttact gatatttgca
      901 gagctgatat ctgcagttaa gaggacattg gctcgcctgc ttgtgatcat tgtgagcttg
      961 ggttatggca ttgtgaagcc tcgcttagga acagtgatgc accgggtgat tggactggga
     1021 ctgctttact tgatctttgc agccattgaa ggcgtcatga gagtcatcgg ggcgaatgac
     1081 tctgatcttg ttcttctggc cagcctgcct ctctctctcc ttgactcggg cttgtgctgg
     1141 tggattttta taagtttggc acagactatg aagactctaa ggctaagaaa gaacacagtg
     1201 aaattttcat tgtataggca ttttacaaat acactcatct ttgcagtgct ggcttctata
     1261 gtgtttatgg tgtggacaac aaagaccttc aggatcgcaa aatgccaatc agactggatg
     1321 gagctgtggg ttgacgatgc gttttggagc ttcctctttt cagtcatcct tattgtgata
     1381 atgttcttat ggaggccgtc agcaaataat cagaggtatg ccttcatgcc cttgatagat
     1441 gactctgatg atgaagtcga ggaattcatg gtaacatctg aaaatttaac tgagggaata
     1501 aaactaagag cctcaaaaac ggtttcaaac ggaacagcta aacctacgtc tgataatttt
     1561 gatgaagatt tgaagtgggt ggaagaaaac attccctctt cgttcacaga tgtagctctc
     1621 ccagtgttag tggactcaga tgaggaaatt atgaccagat ctgaaatagc tgaaaaaatg
     1681 ttctcttcag aaaagataat gtgatcaggg ccccagtggg tccggtgtgt gcaggagcac
     1741 agtcaggtga tgggaaaagc ctggctctca tcaaaactga cagcttcact atgatacgtg
     1801 tttccctttg ttgtcttgga gatctgtgta tgcagatgaa gaattcagga gtgggagggt
     1861 ctgccaccct cagaaagcca tctttaaaac taacttagac agtcagtttc atggccatta
     1921 agttgcctga tttggaaaca atttaagaag ttaacaacat gtgctcagat gcctcttagg
     1981 cggcagccac aggcatgcca tgttgtgtgt ctcagttttc tctggacaaa cgaatctgta
     2041 gctgggctgg cggcacacta ctggtaaatt caaaaccacg cctggtctac atagttctgg
     2101 gacaaccaga gagagctaca tagtgagacc ctgcctcaaa aaaaacaaaa accaaaaagg
     2161 aaaaggaaag agaagaatct atgagcattc cttccctcgc cttcgagata acgtgattct
     2221 cctgaatgct aacacagcac tgttcatctt ttgtaatgat aattttattt gattttttta
     2281 tactgaagtg acaatattgg aactcgagca tgttcatata tttaatcttg tccctttcat
     2341 tggtgtacac aaagctcttg tttgtaaata ccaccatgca ctacacatca cggagtctga
     2401 gctcgggaac acgtatgggc aaagagagac gtcttgaggg tatgtccaaa gacttgcagg
     2461 ccacaggtac acgtgctgct gctacttctg ctgtgaacct ggccatgtga ctcccctaca
     2521 gcactttatc tcagccccgg tgcactgttt cttgtgagcc ttgtggagac ttgtgagata
     2581 tacaaacatc taaccttacc atgcatcaac atgtacttaa ccagctctca accatatctt
     2641 acaccttgtt gttaaattat gtttataatg tatgattgaa agtttctatt ctaatatttt
     2701 ttgaatatag aatgttctag acttgaaagg cacttgaatg tagagtgatg aaaatgtgaa
     2761 cgttttgcca cgttcgtgac caaagatacc aggctgttgg acatgtaatg tggtaatgac
     2821 aggcagggtc ttgtatgcct tctctggagg acttctgccc tgtgagttag aataacttgg
     2881 gataattgag aaaacatgaa aatgacaagg aagagcacta tccatagcct atgatgattt
     2941 tttcactgtg gcaccacaaa acaaaaggtt ttctttcaaa tgcctacttt ctgagtttat
     3001 ttcctgcgta ctcgtttcaa aagggttggt agtgacatat ttctatagtt gcgtgtccgt
     3061 tttaggtttg tcatagtcca ccttgtaacc cagctctgtg aaaactgggg atgtcttgca
     3121 cggggaggag cattgcaggg tgtcactgta tagctctggc tgaggatggg cttgcgaacc
     3181 tcttgctaag actctaggca tgcactacca tggcctgctt cacgttttta gtaccctgtc
     3241 ctcacagcat gaagtagctg actctcaacc cacaggtctg cacttgagta tttctgctta
     3301 gagccagcag gagctacaca ttgagcaggg tgagtctgca gttgatggct ggggaaatgc
     3361 ttctgacacc acctcaatgg gatttctaaa aagcagggaa gacaaatgat gctgcctctg
     3421 gtgtagctcc agactgaaat gactctctgt ccagagaaag tggacttcca tcttaacctc
     3481 cttacaagtg tttttgcaag catgtgtgtg gtgtctgttg catttactga taactgccag
     3541 gtgctaatgt tcagtgccct aaagtgagtg tttctcgggg cccttcttag ccccagcatg
     3601 tgtccctgtg ctgccactgt agctgacaag gacgggaggt gcacccagga cctccgtgca
     3661 gctcctcagg ctccttcccc gtctgcccca agtctgcaga ccacactggg acctcacagg
     3721 tgctcagctc agcctccgtt caggatgctg ctgtaggatg gctctggtaa ttgagaacac
     3781 taaggatcag gctccagttg tattcaagac ttcttgttat acagttcatg ttagatttgg
     3841 aggcatatga agtttgcttg agacattttt ttcgtgcttt gaattaggtt aatatttaaa
     3901 aatctgcctt tgggggtatt tattacattt cagtaagaaa caggaggtgg aaattgtaag
     3961 cttgggagtt ggtaggatac tcccatgcat ttcctgtttt ttgtttgttt gtttgctttt
     4021 ttgggttttg tttttaatct gtcctgtgca gagtgccacc tgtatcacgg tacatcatgt
     4081 ttatactact atgtcaagat taagcttaaa gtatacatac agagttgatt tttataccct
     4141 cttgaaggtt tggagctatt gccctggctg tatatgactg aagctgagag agatcatgct
     4201 acgttttgtc tctcgttctg atatttgtgt ctttgtatgg ttgacagcat gcagtaagca
     4261 atataaaaca ccaagcctta cgtctatcag aaagaagttt aatatataaa attctgaaca
     4321 tataaatata tttaagtgac aatactagag ttttaaggaa gtgtgtactc caggacgggg
     4381 actccagggc ggggactcaa tactgtactt agaagcttct tcagaattag ggaaacattc
     4441 atttccttgg ggagaaagtt tagaggttaa aaatagattc tctattttaa aaagttaaat
     4501 tataatttgg aagaaatttc tttgactata gaacacagca atttaaagga attttgtttg
     4561 aaattttgta tttttgtgcc ttaatatttg gttttttaat aaattgcttt ctgacatttg
     4621 ga
//
