LOCUS       NM_001419031            2164 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transmembrane protein 79 (Tmem79), transcript variant
            2, mRNA.
ACCESSION   NM_001419031 XM_006502124
VERSION     NM_001419031.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Lei,J., Yoshimoto,R.U., Matsui,T., Amagai,M., Kido,M.A. and
            Tominaga,M.
  TITLE     Involvement of skin TRPV3 in temperature detection regulated by
            TMEM79 in mice
  JOURNAL   Nat Commun 14 (1), 4104 (2023)
   PUBMED   37474531
  REMARK    GeneRIF: Involvement of skin TRPV3 in temperature detection
            regulated by TMEM79 in mice.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2164)
  AUTHORS   Morimoto,A., Fukuda,K., Ito,Y., Tahara,U., Sasaki,T., Shiohama,A.,
            Kawasaki,H., Kawakami,E., Naganuma,T., Arita,M., Sasaki,H.,
            Koseki,H., Matsui,T. and Amagai,M.
  TITLE     Microbiota-Independent Spontaneous Dermatitis Associated with
            Increased Sebaceous Lipid Production in Tmem79-Deficient Mice
  JOURNAL   J Invest Dermatol 142 (11), 2864-2872 (2022)
   PUBMED   35752300
  REMARK    GeneRIF: Microbiota-Independent Spontaneous Dermatitis Associated
            with Increased Sebaceous Lipid Production in Tmem79-Deficient Mice.
REFERENCE   4  (bases 1 to 2164)
  AUTHORS   Xie,Z. and Bankaitis,V.A.
  TITLE     Phosphatidylinositol transfer protein/planar cell polarity axis
            regulates neocortical morphogenesis by supporting interkinetic
            nuclear migration
  JOURNAL   Cell Rep 39 (9), 110869 (2022)
   PUBMED   35649377
REFERENCE   5  (bases 1 to 2164)
  AUTHORS   Ito,Y., Sasaki,T., Li,Y., Tanoue,T., Sugiura,Y., Skelly,A.N.,
            Suda,W., Kawashima,Y., Okahashi,N., Watanabe,E., Horikawa,H.,
            Shiohama,A., Kurokawa,R., Kawakami,E., Iseki,H., Kawasaki,H.,
            Iwakura,Y., Shiota,A., Yu,L., Hisatsune,J., Koseki,H., Sugai,M.,
            Arita,M., Ohara,O., Matsui,T., Suematsu,M., Hattori,M.,
            Atarashi,K., Amagai,M. and Honda,K.
  TITLE     Staphylococcus cohnii is a potentially biotherapeutic skin
            commensal alleviating skin inflammation
  JOURNAL   Cell Rep 35 (4), 109052 (2021)
   PUBMED   33910010
REFERENCE   6  (bases 1 to 2164)
  AUTHORS   Mobraaten,L.E., Bunker,H.P., DeMaeyer-Guignard,J., DeMaeyer,E. and
            Bailey,D.W.
  TITLE     Location of histocompatibility and interferon loci on chromosome 3
            of the mouse
  JOURNAL   J Hered 75 (3), 233-234 (1984)
   PUBMED   6203959
REFERENCE   7  (bases 1 to 2164)
  AUTHORS   Eicher,E.M. and Lane,P.W.
  TITLE     Assignment of LH XVI to chromosome 3 in the mouse
  JOURNAL   J Hered 71 (5), 315-318 (1980)
   PUBMED   6160178
REFERENCE   8  (bases 1 to 2164)
  AUTHORS   Lane,P.W. and Eicher,E.M.
  TITLE     Gene order in linkage group XVI of the house mouse
  JOURNAL   J Hered 70 (4), 239-244 (1979)
   PUBMED   489953
REFERENCE   9  (bases 1 to 2164)
  AUTHORS   Taylor,B.A.
  TITLE     Linkage of the cadmium resistance locus to loci on mouse chromosome
            12
  JOURNAL   J Hered 67 (6), 389-390 (1976)
   PUBMED   1021597
REFERENCE   10 (bases 1 to 2164)
  AUTHORS   Lane,P.W.
  TITLE     Two new mutations in linkage group XVI of the house mouse. Flaky
            tail and varitint-waddler-J
  JOURNAL   J Hered 63 (3), 135-140 (1972)
   PUBMED   4557539
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102388.7.
            
            On Mar 27, 2023 this sequence version replaced XM_006502124.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK010144.1, SRR14995048.519696.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-270               AC102388.7         156545-156814
            271-1061            AC102388.7         157240-158030
            1062-1275           AC102388.7         158269-158482
            1276-2164           AC102388.7         160990-161878
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 38.8 cM"
     gene            1..2164
                     /gene="Tmem79"
                     /gene_synonym="2310042N02Rik; 2310074C17Rik; ma; Matt"
                     /note="transmembrane protein 79"
                     /db_xref="GeneID:71913"
                     /db_xref="MGI:MGI:1919163"
     exon            1..270
                     /gene="Tmem79"
                     /gene_synonym="2310042N02Rik; 2310074C17Rik; ma; Matt"
                     /inference="alignment:Splign:2.1.0"
     exon            271..1061
                     /gene="Tmem79"
                     /gene_synonym="2310042N02Rik; 2310074C17Rik; ma; Matt"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1275
                     /gene="Tmem79"
                     /gene_synonym="2310042N02Rik; 2310074C17Rik; ma; Matt"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..2164
                     /gene="Tmem79"
                     /gene_synonym="2310042N02Rik; 2310074C17Rik; ma; Matt"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2147..2152
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem79"
                     /gene_synonym="2310042N02Rik; 2310074C17Rik; ma; Matt"
                     /note="hexamer: AATAAA"
     polyA_site      2164
                     /gene="Tmem79"
                     /gene_synonym="2310042N02Rik; 2310074C17Rik; ma; Matt"
                     /note="major polyA site"
ORIGIN      
        1 gagggtatca tggatccaaa gggcaggggt aggaggggcc caagaggtga acgaagggag
       61 cccaatccag aagctgtgag ctggagggtg gcaggggagg aaacaagagg aaggcttggg
      121 aacggccaca ctagagctgg gagtctgagt ggagcccagc ccagctgaat cgggtgagac
      181 tggcaatggg agagttcaga aaatgaccga ctcctggaat ggagactgag gaaccgagat
      241 ctggtgtcga gttcctggag ggacctgcag gatgacatcg ttctgtggta gccctcggaa
      301 ctgaagcctc acaatgacag aaccggagac actggccctg ctggacatga aggaacccga
      361 gactccagag aagagcccac cgcaggcttt agtcctgcag tcagaggaag aaggtgggac
      421 tgagtcccct ggaactgagt cgctcagagt ggggtcttca gtagggtctc ctatagtcag
      481 agaggggcct gaggatggtc cagacagcac aataagtgag gctgccactt taccctgggg
      541 aactgacccc catcctagcg ccccacttcc ggatcccccg ggctggcgag atattgaacc
      601 agagccccta gagtcagagg cacctactaa gtcggaggag ccattcaaag aggatgccaa
      661 cctgctcccc gagaagacag ttagggcctt cgtgcccatt gatctacagt gcatcgagcg
      721 gaagccacag gaggagcgca tcctgcatcg cgacgctgga ccaggcgagc tcaggaattt
      781 cctgccagct cgactcagcc accctgagcc cccagagcgc aagtgggctg aggccgtggt
      841 gagaccccct ggccggtcct gcgggggctg tggaagctgt ggaggtcgtg aggcactgag
      901 agctgtcgcc tcggtggtgg cggccctcat cttcttcccc tgtctgctgt acggagcata
      961 cgccttcctg cctttcgatg ccccgaggct gcccaccatg agctcccgct tggtttacac
     1021 ccttcgctgt ggggtctttg ccacctttcc catcgtactc gggctccttg tgtacgggct
     1081 gagcctattg tgcttttctg cgcttcggcc cttcggcgag ccgaggcggg aagtggagat
     1141 ccaccggcag tacgtggccc agtctgtgca gctcttcatc ctctacttct ttaacctggc
     1201 tgtgctttcc acctatctgc cccaggacac cctcaagctg ctcccgctgc tcaccggtct
     1261 ctttgccata tctcggctga tatactggtt gacctttgct gtgggccgct ccttccgagg
     1321 ctttggctat ggcctgactt tcctgccact cttggccatg ctggtgtgga acctctatta
     1381 catgtttgtg gtggagccag agcgcatgct cactgcctcc gagagccgct tggactaccc
     1441 tgaccatgct cggtctgttt ccgactacag gccccgctca tggggctgag ccacctagag
     1501 ctgcacaggg ggctttcggc acttccctgg aacagttgta ggcctggcct ttgcccaggc
     1561 aatggacctt tgatgcgagg aaccttgcta cttccccact ggggccccaa atacccttac
     1621 tctctcctag ccgctgcttt acaaacccag aggatgagag cccaaggtcg agactggaga
     1681 agcacacttc cttcttgggc agcttcccac catggcacag gtgctatggc gggatggtca
     1741 tctcactccc tagcttcctg tgggtcagga gtgcagagcc acagcccacc ctgaactgtc
     1801 tgtgccagtg agcgccaagg agaaggaaaa cctgccttag cccgagggta gaagttgatg
     1861 tcatgtcaga tagttggtga agacctttct agggggcctg gttctggacc cgctaccact
     1921 ggcctcaaga ctcttttgcc tcagtcaaga ctgttatatg tagctgttgt ctttcctgtc
     1981 ccaacctaca cgggtctctg taacattcca ctattcaaac ttccaaggag tcccactctc
     2041 agggggcggg gcacagagct aaaatctcca aaagaactgg gtgtgaactc acatggtggc
     2101 taggaaggca gagcgccctc agcccagcat atagctgtga gtatgtaata aatcactgcc
     2161 aggc
//
