LOCUS       NM_172514               2931 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 71 (Tmem71), mRNA.
ACCESSION   NM_172514
VERSION     NM_172514.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2931)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2931)
  AUTHORS   McMahon,A.P., Aronow,B.J., Davidson,D.R., Davies,J.A., Gaido,K.W.,
            Grimmond,S., Lessard,J.L., Little,M.H., Potter,S.S., Wilder,E.L.
            and Zhang,P.
  CONSRTM   GUDMAP project
  TITLE     GUDMAP: the genitourinary developmental molecular anatomy project
  JOURNAL   J Am Soc Nephrol 19 (4), 667-671 (2008)
   PUBMED   18287559
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC163443.6.
            
            On May 1, 2007 this sequence version replaced NM_172514.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK088711.1, AK170268.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-317               AC163443.6         125356-125672
            318-400             AC163443.6         127040-127122
            401-461             AC163443.6         128597-128657
            462-674             AC163443.6         131159-131371
            675-823             AC163443.6         134301-134449
            824-1009            AC163443.6         144644-144829
            1010-1085           AC163443.6         147530-147605
            1086-1147           AC163443.6         153590-153651
            1148-1208           AC163443.6         153753-153813
            1209-2931           AC163443.6         158468-160190
FEATURES             Location/Qualifiers
     source          1..2931
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 29.28 cM"
     gene            1..2931
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /note="transmembrane protein 71"
                     /db_xref="GeneID:213068"
                     /db_xref="MGI:MGI:2146049"
     exon            1..317
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            318..400
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     CDS             361..1224
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /codon_start=1
                     /product="transmembrane protein 71"
                     /protein_id="NP_766102.1"
                     /db_xref="CCDS:CCDS37090.1"
                     /db_xref="GeneID:213068"
                     /db_xref="MGI:MGI:2146049"
                     /translation="MYRDSPLMSTPVANDSRSDEGPSGKLSPTCLFPSFTCDFLDGDS
                     SFECCSIDPLTGSHYICRRSPRLLTNGYYIWTEDSFFCDPDGHITLNPSQTSVMYKEN
                     LVRIFRKKKRTHRSLSSLLDPRASKSWLHGSIFGEVDSLPSEDLWLDGIRSLGSDLDC
                     SLSDGWESQKPVTDTSESSSSGYILPQSLRESSQSSSLQLQVKASGHFEKNSLDHSRA
                     GLMHKVSFQAILLAVCLVISAYTRWFVGGELASIFTCALLITIAYVVKSLFLNLARYF
                     KATSCARFDST"
     exon            401..461
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            462..674
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            675..823
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            824..1009
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1085
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1147
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1208
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..2931
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2808..2813
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /note="hexamer: AATAAA"
     polyA_site      2832
                     /gene="Tmem71"
                     /gene_synonym="E430024D12"
                     /note="major polyA site"
ORIGIN      
        1 aaggcccgtg agactaactc ccaagaatga caagctattc tattcttgga agcagctgaa
       61 agatccagag gcccctgacc accaaattgc cctgtgaaag tggcagagac atggtcatct
      121 ccaaccagaa gggaagacgg ggtgctctgt gggaagtcac ttctgcacct gttgacattc
      181 tgatgggatt tttcagttga agaacggctc ggtccagctt tctgcactac caaccactgg
      241 gaagcttcgt atttcagtaa ccctcctgtc atttatcagt cggaagaaga gcccggggac
      301 tccctgtgga ggaatataaa aaaaaaaatc tgtgaagttt gaacaagcgg ccttctcaag
      361 atgtaccgag actctccact gatgtcgaca ccagtagcaa atgactccag gtcagacgaa
      421 ggaccttctg gaaagctgtc tccgacatgc cttttcccaa gctttacttg tgacttcctg
      481 gatggagaca gttcttttga atgctgctcc atagaccccc tgacaggctc ccactatatc
      541 tgccgcagaa gcccccgact cctcaccaat ggctactaca tttggactga ggacagtttc
      601 ttctgtgacc cagatggcca catcacactg aacccctccc aaaccagtgt gatgtacaag
      661 gagaacttag ttagaatatt tagaaagaaa aagagaactc accgttctct ttcttctctc
      721 ttggaccccc gagcctctaa gtcttggctg catggaagta tctttggaga agttgactca
      781 ctcccaagtg aggatctctg gctggatgga atcaggagcc ttggaagtga tctagactgt
      841 tctctgagtg atggctggga gtctcagaag ccagtcacag acacttcaga atcctcctct
      901 tctggctaca tcctgcctca gtctctcaga gaaagctccc aaagttcctc tcttcaactt
      961 caggtgaaag catcagggca cttcgaaaag aacagtttgg atcattcaag agctggtttg
     1021 atgcataagg tctcctttca ggcaatcctc ctagcagtgt gcttagtcat ttctgcatac
     1081 acaaggtggt ttgtgggagg agaattagcc agcatcttta catgtgcatt gctgatcaca
     1141 atagcttatg ttgtgaaatc actgtttctc aaccttgccc gctatttcaa agccacctcc
     1201 tgtgctagat ttgacagcac ttgaggaata catgcaatga atgtcttcgc tttgaatacc
     1261 tgggaacagt aatttgtagc cttcttggaa tcaaccactt tattggaagg gaacaagcaa
     1321 atataaaata gaaaaattaa tttgacaatg ttattttttt ctgaaaatct taatttccac
     1381 atgtaatagt cattggttca ggacaataat attaattttt ctttctttcc aaaaacactg
     1441 tcagttgaaa gagaagggat aggaaaaagt aacagaggac agaccacctg gagtaatgtt
     1501 tcctcattgt cccaaatata atgaacttca aacatttatt ttaattagag aatttgtgag
     1561 aggcctggac catgggtata gcatgtctgc catcatgcag ctatgccttg ctaacttact
     1621 ttaactaaac aatgcaaaca agcttattaa tattcataaa agctgaatag gaaatagaca
     1681 ctgtttgtac atacaataca ataaatggat gcatttgaaa atgtgcacag attttagacg
     1741 gtgaaaaagg tgctattgtt tgtctccaga tgtccatgtg ttgaaacttt cattgtcaat
     1801 gtggcaatgt taagaggtgg taggactttt aagaaatcgg gccagtggga tatccttaca
     1861 tctgagggaa cttcattcag aatgtgtaaa tggtcagtcc ctcagtctgt ctctggcttt
     1921 ctgtccagct atatgatcac ttcctcccat gtccatcatg tgatgtgatg tgatgctatc
     1981 tgccttgaaa ctatcactag aatgaagaat atgttgtcac tatgcatagg aacctgcaga
     2041 actgtgcgcc aatggaattc cttttcatca ctcagtgttc tgcctcgggt attttattat
     2101 agtaatggaa aatagactaa gaaagcggca gatcattgaa caggggagag ccattcctta
     2161 gactatgaat ttttctcttg atcaattttt cttactaggt tttatttttt aaatttctgg
     2221 ggagtaatga tcatctttta ttcacattgt gatgaaaata tgatatataa aaattcttta
     2281 agtacaaaat aaaggaaaaa ctagtgtttt aaagcacatt aaataataaa gctgtataat
     2341 gggctgtaag gttataaaag atattcagta ttcttacctc ttaccaagaa ctttcagata
     2401 taacctgttg aggatgctcc atgctgagca atgtctatgt atagaaacta catgctttaa
     2461 aattaatatc aaattaatac cttttgtgtc tatgattgtt aatattcatt atcatcttga
     2521 ctgcatttag catcacccac gagactaacc tttagttatg tctacatagt tgtttctaga
     2581 gaggttgaag gaagaagacc tactctgaac ttgggtacca atatcccatg ggcagaacaa
     2641 aaagaataaa aatttccttg acagaataaa aacgacggag ggaacaagag agcaccagca
     2701 ttcatctttc tctctctttt ttgactgtgg acacaatgtc actgttcacc caggttctgg
     2761 ctccttgtct gcctgtcatg agctgtatcc tcttaaactt tgagtcaaat aaacctttct
     2821 tttcttaagt tacttctgtc tggtgttttg tcaaagcagt aagaaagatg accaatataa
     2881 tgccattttg tttctgtact tttttggttg aataaacttc tactaatgaa t
//
