LOCUS       NM_175285               2674 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus transmembrane protein 62 (Tmem62), mRNA.
ACCESSION   NM_175285
VERSION     NM_175285.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2674)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2674)
  AUTHORS   Pan,J., Mor,G., Ju,W., Zhong,J., Luo,X., Aldo,P.B., Zhong,M.,
            Yu,Y., Jenkins,E.C., Brown,W.T. and Zhong,N.
  TITLE     Viral Infection-Induced Differential Expression of LncRNAs
            Associated with Collagen in Mouse Placentas and Amniotic Sacs
  JOURNAL   Am J Reprod Immunol 74 (3), 237-257 (2015)
   PUBMED   26073538
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL844548.7.
            
            On Dec 29, 2021 this sequence version replaced NM_175285.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC070410.1, AK046793.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-215               AL844548.7         86252-86466
            216-327             AL844548.7         86687-86798
            328-465             AL844548.7         88119-88256
            466-511             AL844548.7         89461-89506
            512-653             AL844548.7         93322-93463
            654-778             AL844548.7         95571-95695
            779-901             AL844548.7         95824-95946
            902-1057            AL844548.7         99319-99474
            1058-1217           AL844548.7         102466-102625
            1218-1331           AL844548.7         105394-105507
            1332-1416           AL844548.7         108062-108146
            1417-1521           AL844548.7         111485-111589
            1522-1640           AL844548.7         113670-113788
            1641-2674           AL844548.7         115807-116840
FEATURES             Location/Qualifiers
     source          1..2674
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 60.37 cM"
     gene            1..2674
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /note="transmembrane protein 62"
                     /db_xref="GeneID:96957"
                     /db_xref="MGI:MGI:2139461"
     exon            1..215
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..1967
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /codon_start=1
                     /product="transmembrane protein 62"
                     /protein_id="NP_780494.1"
                     /db_xref="CCDS:CCDS16629.1"
                     /db_xref="GeneID:96957"
                     /db_xref="MGI:MGI:2139461"
                     /translation="MARMLAVRVVAGLAAAAVAALLLEHYGLAGPTTPLPKPRGSQRP
                     HPAPGSEANNIFWGLQISDIHLSRFQDPGRALALEKFCSETIDIIQPALVLATGDLTD
                     AKTKEHLGSRQHEVEWQTYQRILKKTRVMEKTKWLDIKGNHDAYNIPSLESIANYYRK
                     YSAVRKDGAFHHIHSTPFGNYSFISVDATQRPGPKRPYNFFGILDEKQMEELVEFSKK
                     SSQSNQTIWFGHFTTSTIMSPSPGIRTVMGSATAYLCGHLHTLGGLMPVLHTRHFTGT
                     LELEVGDWKDNRRYRIFAFDHDLFSFADVTFDKWPVVLITNPKSLLYSCAKHEPLERL
                     FHSTHIRVLAFSLSPITSVTVKIDGGDIGQASHLSGPIFILKWNPRNYSNGTHTIEVF
                     VQDSAGRSRTAHHIFSAQEDAHLTFDPLASFILLTDHYIVARVLFVLIVLIQLTTLIT
                     FRYLAYPELKEPLGFANMTTFSLHILSKINISYYSVLLLTLYTVLGPWFVGEIIDGKL
                     GCCFSFGIFVDGHFLQGGLTFINGIIQLVFFNIPLMAYVCWSLLHRCFGHSFRSHLHQ
                     GKYWKIIPVYLLILLLYIWQVYSCYFLHVTYGSLAFTFSPLRTWLTLLTPVLIYRVWT
                     LNSTELGIFMVQLKSHLSS"
     exon            216..327
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            328..465
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            466..511
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            512..653
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            654..778
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            779..901
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            902..1057
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1217
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1331
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1332..1416
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1417..1521
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1640
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1641..2674
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2445..2450
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /note="hexamer: AATGAA"
     polyA_site      2463
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /note="major polyA site"
     regulatory      2629..2634
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /note="hexamer: ATTAAA"
     regulatory      2639..2644
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2645
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
     regulatory      2656..2661
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /note="hexamer: AACAAA"
     polyA_site      2665
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
                     /note="major polyA site"
     polyA_site      2674
                     /gene="Tmem62"
                     /gene_synonym="B830009D23Rik"
ORIGIN      
        1 aagtgcgggc cggagcgctc cggggctgcg ccgagatggc gagaatgctg gcggtccggg
       61 tggtggcagg gctggcggcg gccgcggtgg ccgccctgct gttggagcac tacggcctgg
      121 ctgggccgac tacgccgctg ccgaagccca gaggctccca gaggccgcac cccgccccgg
      181 gctcggaagc caacaacatc ttctgggggc tgcagatatc cgacattcac ctgagcagat
      241 ttcaagatcc aggcagagcg ctggccttag agaagttctg ttcggaaact attgacatca
      301 ttcaaccggc tcttgtcctg gccactggag acctgacaga tgccaaaaca aaggaacact
      361 tgggatccag acaacatgaa gtagaatggc aaacttacca gagaattctg aaaaagacaa
      421 gagtcatgga aaaaaccaag tggctggata tcaaaggaaa tcatgatgca tataacatcc
      481 caagtctgga gagcatcgcc aattattaca ggaagtactc tgctgtgcgg aaggacggcg
      541 cttttcatca catccacagc actccctttg gcaactattc cttcatctct gtggatgcca
      601 cccaaaggcc agggcctaag agaccctata atttctttgg cattttagat gagaaacaga
      661 tggaggaact cgtagagttt tccaagaaaa gcagtcagag caaccagacg atttggtttg
      721 gccactttac aacatcaact atcatgtctc catccccagg gatccggaca gtaatgggtt
      781 ccgctacagc ttatctgtgt gggcacctcc atacgcttgg tgggctgatg cctgttctgc
      841 acacccgtca cttcacaggc acgctggaac ttgaggtggg agactggaaa gacaacagaa
      901 ggtaccggat ctttgccttt gatcacgacc tctttagctt tgcagatgta acctttgaca
      961 agtggcctgt ggttctcatc accaatccca aatccctcct ctatagctgt gctaagcatg
     1021 agccgctaga aaggctcttc cattccacac acataagagt attggccttt tccttatccc
     1081 ccatcacttc tgtcactgtt aagattgatg gaggtgatat aggccaggct tctcacttgt
     1141 ctggtcctat tttcatactg aagtggaacc ctagaaacta cagtaatggg acacatacca
     1201 tagaagtatt cgtccaggat tctgctggaa gaagtaggac tgctcaccac atattttctg
     1261 cccaagagga tgctcatctc acatttgatc ctttggcatc atttatcctc cttactgacc
     1321 actacattgt ggcccgggtc ctgtttgtgt tgattgtgct gatccagctc accacactga
     1381 ttacattcag atatctagca tacccagagc ttaaagaacc tctgggattt gcaaatatga
     1441 ccacattttc ccttcatatc ttgagcaaaa taaacatctc ctactattct gttttgttgt
     1501 tgaccttgta tacagtgctg ggaccatggt ttgttggtga gataattgat ggcaaattgg
     1561 gttgctgctt ttcatttggg atatttgttg atggacattt cctgcaaggt ggtctaacat
     1621 ttataaatgg aattatacag ctggtgttct ttaacatccc cttgatggct tacgtatgct
     1681 ggagtttgct acatcgctgc tttggtcaca gcttcaggtc tcatctccac cagggaaaat
     1741 actggaagat tatacctgtt tacctactta tacttctact gtacatatgg caggtttatt
     1801 cttgctactt tcttcatgtg acatatggct ccctagcctt tacattctct ccattgagga
     1861 cctggttgac attgctgaca cctgtgctca tttaccgtgt gtggacattg aactccactg
     1921 aacttggaat attcatggtg cagttaaaaa gtcatctgag ctcctgaagt ccatggctta
     1981 cagctagcag cctggaagaa gtccagcctc cacatttgtg gctcagatct ctgccctgtg
     2041 gcagatggga aagccagtat cagtgggtga gcttcaggaa gcagtcactc cttggacatc
     2101 tgaatgttgg aaatgtttac tactgattct tgctgtgtgg actgcagaaa agtctaacaa
     2161 ttgattcttc ctcaggaggc aaagagccct aatcaagaag attgccacag tggggtctct
     2221 gtgtcactgt gtcccttggt actactgtgt ttattagggt catcctgtga aaagcatcca
     2281 gcccgaactt ggagttcagg atgtcatttt ctgcctaggg agcctgtgga aacttgtcct
     2341 ggacctttac tgctcctgag acttgacttc ccagcctgtt tccccaccga tcatgggctt
     2401 tctgcttcct tagccaaggt tgttttcaac taatcaaata aatgaatgaa tggtagccat
     2461 aaacaatggg ttggagagat cagtggttaa gagcatgtac tttacctcca gaagacccga
     2521 gttcaatccc tagcaaccat gtcagatgct cacaactgcc tgtaactcta gctccaggcc
     2581 agagccactg tgggcaccta cattcatatg tgcacagact tacatgtgat taaaaaataa
     2641 taaaagataa gtattaacaa agaaatatca caaa
//
