LOCUS       NM_001370848            1475 bp    mRNA    linear   ROD 01-MAY-2024
DEFINITION  Mus musculus transmembrane protein 61 (Tmem61), mRNA.
ACCESSION   NM_001370848 XM_006503496
VERSION     NM_001370848.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1475)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1475)
  AUTHORS   Aboudehen,K., Farahani,S., Kanchwala,M., Chan,S.C., Avdulov,S.,
            Mickelson,A., Lee,D., Gearhart,M.D., Patel,V., Xing,C. and
            Igarashi,P.
  TITLE     Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant
            polycystic kidney disease and regulates mTOR signaling
  JOURNAL   J Biol Chem 293 (24), 9388-9398 (2018)
   PUBMED   29716997
REFERENCE   3  (bases 1 to 1475)
  AUTHORS   Harrow,J.L., Steward,C.A., Frankish,A., Gilbert,J.G.,
            Gonzalez,J.M., Loveland,J.E., Mudge,J., Sheppard,D., Thomas,M.,
            Trevanion,S. and Wilming,L.G.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL954352.10.
            
            On Jun 6, 2019 this sequence version replaced XM_006503496.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.237296.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-689               AL954352.10        123413-124101       c
            690-1039            AL954352.10        120507-120856       c
            1040-1475           AL954352.10        116574-117009       c
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 49.67 cM"
     gene            1..1475
                     /gene="Tmem61"
                     /gene_synonym="4732441L20Rik"
                     /note="transmembrane protein 61"
                     /db_xref="GeneID:329909"
                     /db_xref="MGI:MGI:3041156"
     exon            1..689
                     /gene="Tmem61"
                     /gene_synonym="4732441L20Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             675..1268
                     /gene="Tmem61"
                     /gene_synonym="4732441L20Rik"
                     /codon_start=1
                     /product="transmembrane protein 61"
                     /protein_id="NP_001357777.1"
                     /db_xref="CCDS:CCDS89792.1"
                     /db_xref="GeneID:329909"
                     /db_xref="MGI:MGI:3041156"
                     /translation="MVACQTCARGRVASTVRYCMTVGGSVVLVVGTLCFASWSEGSVA
                     VQPGSLPATVKQPSPEMPPTWLKSVIILCCIVGGLLLFFGLLWSIQERTKKSSQGDFY
                     RLSRDLYRLAVECPVKEPYRPPKEAVISTYEETMHYPLAEGLLQFPVQPEEDLQCHAP
                     GDALLGSASFSRPPSYESILLAQGPVSGLSAAGSSPV"
     exon            690..1039
                     /gene="Tmem61"
                     /gene_synonym="4732441L20Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1475
                     /gene="Tmem61"
                     /gene_synonym="4732441L20Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1443..1448
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem61"
                     /gene_synonym="4732441L20Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1468
                     /gene="Tmem61"
                     /gene_synonym="4732441L20Rik"
                     /note="major polyA site"
ORIGIN      
        1 agaaggcagt gtctccaggg aaggagcact ccaagctggt cctctgactg gataatgctg
       61 tcctggagtg tggtgagagt aagggggtgg gctgctctct ggcccatgat aaagctgttc
      121 ctgtcaacgt agggtgctag aaacaattgg atgagtggct ttcccttttt gagcctcagt
      181 ttctctttcc tatggaacag atgtgtgagg cctcccacag ttcacctagc ctggatgtct
      241 gtgggaaagg agtttccagg cccaagttcc atctgcgcag tttccctctc tctgggaaat
      301 tgcatccccc cacctcagta gacgatccct ttaaggttgg gcggggccag ctggacactg
      361 gccagtgagg aagcactgaa gcgggccact agagtccttg aggtagttag tggctatcca
      421 aggactagga gaccgagggt gggtggcttc ccagtggaat ccccagctgc tgggcggggt
      481 gacaaggagg ggaggaacaa cctcactgag ccctgggctc aaccttactg tggacgaaag
      541 cagggacctc aaggagccgt gaagtgcaaa gggtgcagct gtggaaagct gccagaacct
      601 ctctagatgg tcgcgtctgc agagctcagc caccaggcct tctagtgcgc tgggctctcc
      661 cctagtccag actgatggtt gcatgccaga catgcgccag aggccgggtg gcctccactg
      721 tgcgttactg catgacggtc ggtggctcag tggtcctggt ggttgggaca ctctgcttcg
      781 cgtcgtggag cgaaggcagt gttgccgtcc agcctggctc gctgcccgcc accgtgaagc
      841 agccatctcc cgagatgccc ccaacttggc tcaagtctgt catcatcctc tgctgcatcg
      901 tgggtggtct gcttctgttc tttggcctgc tttggtccat ccaggaaagg acaaagaagt
      961 caagccaggg ggacttctac cgactctcca gagacctgta tcgccttgct gtggagtgcc
     1021 ctgtgaagga gccctacagg cctcctaagg aggctgtcat ttccacttat gaggagacca
     1081 tgcactatcc actggctgag ggtctcctgc aattccctgt gcagcctgaa gaagacctcc
     1141 agtgccatgc cccaggggat gccctgctgg ggtcagcatc cttctcacgc ccacccagct
     1201 acgagagcat cctcctcgct caggggcctg tttctggatt gagtgctgca ggctccagcc
     1261 ctgtctgagc tcaggctgca ggagagttgc aggtctccag caaggctgtg aaactggccc
     1321 ctaaccagcg agctttgctc gaggcctcca ccaggactgg gttcacagca ggcattcaac
     1381 aagaggtcta ttgctggggg ctgtttatgc atccgttgct gtgtgagcat gagttggctt
     1441 taaataaacc ccactttatt atgtctcaca tttta
//
