LOCUS       NM_001081186            2875 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 52B (Tmem52b), mRNA.
ACCESSION   NM_001081186 XM_284236
VERSION     NM_001081186.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2875)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC161602.4.
            
            On Feb 6, 2007 this sequence version replaced XM_284236.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK085571.1, AK085389.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849385, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-548               AC161602.4         80680-81227         c
            549-592             AC161602.4         79527-79570         c
            593-631             AC161602.4         77702-77740         c
            632-798             AC161602.4         77043-77209         c
            799-2875            AC161602.4         74557-76633         c
FEATURES             Location/Qualifiers
     source          1..2875
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 63.37 cM"
     gene            1..2875
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /note="transmembrane protein 52B"
                     /db_xref="GeneID:330428"
                     /db_xref="MGI:MGI:2442838"
     exon            1..548
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             483..1043
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /codon_start=1
                     /product="transmembrane protein 52B precursor"
                     /protein_id="NP_001074655.1"
                     /db_xref="CCDS:CCDS39659.1"
                     /db_xref="GeneID:330428"
                     /db_xref="MGI:MGI:2442838"
                     /translation="MFSLMTAWAQVLMASGLFYFIQLPGARSEENCVNTEHCLTTDWV
                     HLWYIWLLVVVGALLLLCGLTSVCFRCCLSRPENGEDGAPPPYEVTVIAFDHDSTLQS
                     TITSLQSVFGPAARRILAVAHAHSSLGQLPSSVDTLPGYEEALRMSRFTVARCGQKVP
                     DLPSVPEEKQLPPTGKESPGTEPPSH"
     exon            549..592
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            593..631
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            632..798
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            799..2875
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2325..2330
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2350
                     /gene="Tmem52b"
                     /gene_synonym="D630042F21Rik"
                     /note="major polyA site"
ORIGIN      
        1 atggagagag ggtggagaga gattggcagt gactttcaga cttcagcggt catccaggag
       61 ccgagagtgt gtaactagtt tcctgatgaa cacaagaaca catctggtca ctcacaatct
      121 gcctttgacc tattacaggt ccaagtctct cattatagac tgaggaaaaa aaaatctaac
      181 tcagaggaca aatgtgctct tcttgaatgc agacgaagaa aaattaaata cacagaaaag
      241 tttgattgaa gaaaggaagt ggagaggaag ccaatgtgga gaccccgtga agagaactca
      301 ggaggaggaa actaaaaggg aaaaggaaac cgtaaaatat aaagccagcg ggaacaagga
      361 gaggagattg atctattgcc gagaaaaaat tctctttagg aatccttcac caccaagttc
      421 cacgtggcac ggagcatggg aaggatacag cagatgcagc cggcgtgacc tttctggacc
      481 agatgttcag cctaatgaca gcctgggccc aggtgctgat ggcctctggc ctgttttatt
      541 tcatccagct tcctggggcc aggagtgagg agaactgtgt caacactgaa cattgcctga
      601 ctactgactg ggtgcatctc tggtatatat ggttgctggt ggtggttggc gcactgcttc
      661 tcctgtgtgg cctgacttca gtatgcttcc gctgctgcct gagccgtcca gaaaacgggg
      721 aagatggggc cccgccgcct tatgaagtga ctgtcattgc ttttgaccat gacagcactc
      781 tccagagcac cattacatct ctgcagtccg tgtttggccc tgcagctcgg agaatcctgg
      841 cagtggctca tgcacacagc tccttgggcc agctgccttc ctctgtggac acactcccag
      901 gctacgagga agctcttcgc atgagccgct tcacagtcgc aaggtgtggg cagaaagttc
      961 ctgatttacc ctccgttcca gaggaaaagc agctgcctcc cacggggaag gaatctcctg
     1021 ggacagaacc cccatcacac tgatgggggt actgacggga ttcctgatag tcaaagcatc
     1081 atcagacctg gaacgatccc aagatacatg agatgttttc ttttatacca cccagcaagg
     1141 ttcaggatgc cacctagaca tgttctgtga acaaggtggg ttctcactct tcattcacaa
     1201 caacgtgctt tttctgatac acacattgct aattgagttc taactcgtta ttcaaagttc
     1261 aaagcttgca actcaccttt agctatattg actactacca aagcatggaa cattaaggtg
     1321 tcttgaattc cttcaactac agcatgcata taaagtttct ttaaccctat aatcctgcaa
     1381 attgctcttc cctctacttg actgtggtaa tcttgaaggg agacatactt tgtgcacagc
     1441 cactaccatc agtgcaccaa atccatgcat ctttcctttt agggaacaac caccattatg
     1501 ctgaacaacc tggtacacca tagaatcccc acctggactt gcagattgca cagccagggg
     1561 ttctgatatg agtggagaga ctatactaca gtatgtggca catgtcaaaa ccgttctatc
     1621 agtttagtct tacccacaag agtgaaacat tgtatagagt acagaagtgg tcctagcaac
     1681 ttttcagtgc tttgtcctgc aaacacacac acacacactc acacacacac acacacacac
     1741 actttttagg ctctgaaaga aagcattcct ctgcttcttt ccttcttgtt ctcaggatgg
     1801 aaagccttca ccatgtagtc tagagtgacc tatcctggct cttgaggtgg gtcttgctgc
     1861 cacctagtgg aacaataatt aaaaattcac tccgttgagg tctgtgcacc tttccaattc
     1921 tcagtgctac cctaactaag cctggatctt cttctgatgg catatacaat caaaagaggg
     1981 tgccaagcta tcctggtggt gccaccttcc acactgctgt cattaccatc aaagcagtga
     2041 gatgtattct gggggaaaaa aaaactgctt agagaagtta ctcaaatcct ggaataatca
     2101 ttttctcatc tgtaagttag acatcattgt gcacattcaa gaacacatat accccaaggc
     2161 actatttgta aaacatcccg tgtatcacgt gttattcttc ctgttgtcct ctgctcttca
     2221 gtggcctgtg gtaacttcac tgagaattat tttctggttt gtccttttgc ctgtctgtct
     2281 gctgtgttat tgtaaaacca taggtaaagt acctttattt tatcaataaa aatgtcttga
     2341 ttgagataaa cagaaaacaa caacaacaac aacaacaaca acaacaacaa aacacctaag
     2401 gattcctctg aacacacttt gcagacaaaa ctgttttgta tgtgactagc tggggtaccc
     2461 tggggggatg attcgatggg ggagggggct gatgagtgct gcacctcatt aaatacattc
     2521 ttgcaatgtt caccgaagcc ctgagggaaa agcactgcaa gtgagtgcaa tctgctagtg
     2581 attggaactc ctgaatcaca gatcagagtg cctgggcaag ctgatgagca taagttgtta
     2641 gcagcagcta aaacggtttt actttacccc caccaagaaa gtcatccaca aaatcggctt
     2701 cactttctct tcaccttcaa ttattcatct tttcttttga gatggtactt tgatgcatag
     2761 actagggcag tctcccagtt tctatgacac caagacttgc cttcacctgc caatttcctg
     2821 cctaactctg tctcttttat tattattatt aaattatttt atttatttat attcc
//
