LOCUS       NM_001253856             950 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 52 (Tmem52), transcript variant
            2, mRNA.
ACCESSION   NM_001253856
VERSION     NM_001253856.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL670227.7.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice site in the coding region, compared to variant 1. This
            results in a shorter protein (isoform 2), compared to isoform 1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK009779.1, BC150685.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                AL670227.7         185974-186070
            98-141              AL670227.7         186163-186206
            142-183             AL670227.7         186322-186363
            184-362             AL670227.7         186849-187027
            363-950             AL670227.7         187131-187718
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 86.17 cM"
     gene            1..950
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /note="transmembrane protein 52"
                     /db_xref="GeneID:69671"
                     /db_xref="MGI:MGI:1916921"
     exon            1..97
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            98..141
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            142..183
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            184..362
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            363..950
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      928..933
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /note="hexamer: AATAAA"
     polyA_site      948
                     /gene="Tmem52"
                     /gene_synonym="2310043I08Rik"
                     /note="major polyA site"
ORIGIN      
        1 gttggactga gtttcgctct gtctaaggaa catggccccg gggccgtcag ccacacaggg
       61 gatcctgctg ctgctgcctc tcctgcctct gtcccaggtg acgctgggtt ccgcggaccg
      121 caactgtgac ccctcggatc agtgcccgcc ccaggcccgc tggagcagcc tatggcatgt
      181 ggggctcatc ctgctcgcca tactcctgat gcttttgtgt ggggtcacag ccagctgtgt
      241 acgattctgc tgcctcagga agcagacgca cacccagtca cacacgccag cggcgtggca
      301 gccctgtgac gggacagtca tcccagtgga cagtgatagc cccgcacaca gcactgtgac
      361 ctcctacagt tccgtgcagt acccactggg catgcggctg cccctgtact ttggagagcc
      421 agaccctgac tccatggtcc ctcccaccta cagcctctat gcgtctgagc tgccaccctc
      481 ctacgatgaa gttgtgaaga tgataaaagc cagggaggaa gtggcagctc cctctgagaa
      541 aaccaactct ctgcctgagg ccttggagcc agagaccact ggagggcccc aggagccagg
      601 ccccagtgcc cagcggccct agtcaagccc gcttgaaaag ggtgggagtt ctctcttctg
      661 gagccattaa accattgcct ggattcctgg cacttaggac caaggagccc cacctgtgtc
      721 atccttcccc tgggaaggcc agccatccag cacattgctg cggacgcggc ctcgttgcta
      781 tgcaatgcct ggccagccag cctgcccctg tattggcccc tcttcttcac ccttcccatc
      841 catccggggc ccagcaggcc ctcatcccgg aggagcctgg atcttgggag ctcaaacccc
      901 actggcatgc cagccctttg aggggaaaat aaagtttacg taaacatgtt
//
