LOCUS       NM_138751               4082 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus transmembrane protein 47 (Tmem47), mRNA.
ACCESSION   NM_138751 NM_175771
VERSION     NM_138751.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4082)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4082)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4082)
  AUTHORS   Gurdziel,K., Vogt,K.R., Walton,K.D., Schneider,G.K. and
            Gumucio,D.L.
  TITLE     Transcriptome of the inner circular smooth muscle of the developing
            mouse intestine: Evidence for regulation of visceral smooth muscle
            genes by the hedgehog target gene, cJun
  JOURNAL   Dev Dyn 245 (5), 614-626 (2016)
   PUBMED   26930384
REFERENCE   4  (bases 1 to 4082)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   5  (bases 1 to 4082)
  AUTHORS   Azhibekov,T.A., Wu,Z., Padiyar,A., Bruggeman,L.A. and Simske,J.S.
  TITLE     TM4SF10 and ADAP interaction in podocytes: role in Fyn activity and
            nephrin phosphorylation
  JOURNAL   Am J Physiol Cell Physiol 301 (6), C1351-C1359 (2011)
   PUBMED   21881001
  REMARK    GeneRIF: TM4SF10, possibly through ADAP, may regulate Fyn activity
REFERENCE   6  (bases 1 to 4082)
  AUTHORS   Quina,L.A., Wang,S., Ng,L. and Turner,E.E.
  TITLE     Brn3a and Nurr1 mediate a gene regulatory pathway for habenula
            development
  JOURNAL   J Neurosci 29 (45), 14309-14322 (2009)
   PUBMED   19906978
REFERENCE   7  (bases 1 to 4082)
  AUTHORS   Bruggeman,L.A., Martinka,S. and Simske,J.S.
  TITLE     Expression of TM4SF10, a Claudin/EMP/PMP22 family cell junction
            protein, during mouse kidney development and podocyte
            differentiation
  JOURNAL   Dev Dyn 236 (2), 596-605 (2007)
   PUBMED   17195181
  REMARK    GeneRIF: TM4SF10 functions during differentiation of podocytes and
            may participate in the maturation of cell junctions from simple
            adherens junctions to elaborate slit diaphragms.
REFERENCE   8  (bases 1 to 4082)
  AUTHORS   Christophe-Hobertus,C., Szpirer,C., Guyon,R. and Christophe,D.
  TITLE     Identification of the gene encoding Brain Cell Membrane Protein 1
            (BCMP1), a putative four-transmembrane protein distantly related to
            the Peripheral Myelin Protein 22 / Epithelial Membrane Proteins and
            the Claudins
  JOURNAL   BMC Genomics 2, 3 (2001)
   PUBMED   11472633
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL671873.15.
            
            On or before Dec 25, 2009 this sequence version replaced
            NM_175771.4, NM_138751.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK030761.1, AK162304.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-517               AL671873.15        21052-21568
            518-658             AL671873.15        34699-34839
            659-4082            AL671873.15        44860-48283
FEATURES             Location/Qualifiers
     source          1..4082
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 38.38 cM"
     gene            1..4082
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
                     /note="transmembrane protein 47"
                     /db_xref="GeneID:192216"
                     /db_xref="MGI:MGI:2177570"
     exon            1..517
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
                     /inference="alignment:Splign:2.1.0"
     exon            518..658
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
                     /inference="alignment:Splign:2.1.0"
     exon            659..4082
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3780..3785
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
                     /note="hexamer: AATATA"
     polyA_site      3806
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
     regulatory      4051..4056
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
                     /note="hexamer: ATTAAA"
     polyA_site      4076
                     /gene="Tmem47"
                     /gene_synonym="3010015F07Rik; BCMP1; Tm4sf10"
                     /note="major polyA site"
ORIGIN      
        1 gccaggttgg ccgcgccagg gaggagcagg cgcgggcgcg ggcgcgggct gatcgcttgc
       61 tgaagattct ctctgcgttt gctgtcgctg cagcagcgga cgacctcctt agggccaggc
      121 gtcccagcta ggcaagtcca gttgaccact cggtgtgctt aactgagacc caaggtacga
      181 cttcttggcg cggttagcgc cgctttcctg ttcgggaggt cccgctccag gctcttcgga
      241 ccctcctggc gtcctcgttt gcgtcgggaa gggcggcagc ggcgcccggg catggcttcg
      301 gctggcagcg gcatggaaga ggtgcgagtg tcggtgctga ccccgctcaa gctggtcggg
      361 ctggtgtgca tcttcttggc gctgtgtctg gatctgggag ctgttctgag cccggcctgg
      421 gtcaccgcgg accaccagta ctacctgtcc ctgtgggagt cctgccggaa acccgccaac
      481 ctggatatct ggcattgcga atccactctc ggcagcgatt ggcagattgc tactctggct
      541 ttactcctgg gcggtgctgc catcattctc attgcattcc tggtgggttt gatttcaatc
      601 tgtgtgggat cacgaaggcg cttctacaga cctgttgctg tcatgctttt tgcagcagtt
      661 gttttgcagg tctgcagcct ggttctttat ccaatcaagt tcattgaaac tgtgagcttg
      721 aaaatttacc acgagttcaa ttggggttat ggcctggcct ggggtgcaac tatattttca
      781 tttgggggtg ccattcttta ttgcctgaac cctaagaact atgaagacta ctactaaaat
      841 caagtctgaa aaacaaacac acatatgcac acacacacac aaaacataca ctacacacac
      901 cacattacac acaaacacac acacacacac acacacacac acaccacatg aaaaagagaa
      961 actaaccatc caacaaaaga tttgtgttga catcttttct aacactattt tctaaaacac
     1021 ttgtggagcc tcaagcagtt tgctcagttg atttaatatc cttgcctttg ggtgtcaaca
     1081 tcataaccag cttttatatc cattttaggg acctgcacaa attaagaatg ctgattagat
     1141 ataggcatat gctgcaaact tccaatatgc ttatgccatt tctcttgaca tgtgaaggat
     1201 ctgtatgaca gcaaccattt tgagaagcta gttggaatga gaattgccag agtctctttt
     1261 tgcctgcagg gaaacagctg cataagcaac atgtaaaagt tccattgctc tgacatttct
     1321 actgttggag cccttatcac ctgtttatat tgcgcagtgg ctatattggt tattggttac
     1381 tttgctttgg aatttgaaac tgccatttgg gcatctaatg agaatcatag atatagccat
     1441 ttaattctac ctttaaggct gttcttttta atagcaaatt atactttacc aattatcatc
     1501 tcttgggaag gaagtcaacg tttggagaca tgtgtttttc attatgtagt tataaaattg
     1561 agggtgtctg ctttcccctg gggcaatcag aaagaaatgt gcatgagttg cttttgtacc
     1621 cttaaaatcc tttaaaaatt ttgcagcaaa caattgtcca tatgtaacaa gcttattctt
     1681 ctacaccaca agccattacc atactggtaa taagttgctc attaatagtc cacatacatg
     1741 tacctatcat tcatataatc aatacttgct ctagtgaagc aatttgaaca ctaaccttgt
     1801 atgcatcaac agactcagta ttcacagtta cttaccatac aaaagttcat ataccttaaa
     1861 gcttttgctc tgtgttctct actgattcat tggaaagtat taatagaatt gcctaagaag
     1921 taaaattgaa atgttgttaa tctgaaattt aatgattctt ttataagtat tgtagttcaa
     1981 aagagagtag gaattagaat gatcactttg tgtaaaattc attaaaatac aaggctgcta
     2041 tttttgcaag tattttaaat gtcttcattt taaaataaag gaatagtgat agatttctat
     2101 aaatgtctaa aagtctcagt agatgagtag tattccgttg ttacctggtc ctctgaagtt
     2161 aaatgatggg ctaactgatt tgtgcacaca agtgtgatga atttatgtta gggaaattat
     2221 tcactgacta ttccaaggga agaaaacatc aacaataagg aataagtttg caattgatct
     2281 ttactgcaaa cttgtgttaa ttctgtttat tatacaaatc tggatagttt aagtataagc
     2341 ctatttttat ataaaatata caattctgat aggaaagtta taaatgatta tttttgttaa
     2401 caaagacatt aaagcaagtt ttctctcatt tgaccctctt gaagacagaa acattgggga
     2461 agaaaacatt aaaaatgtat ctatttacta atatattata caattcacta agaaaaagac
     2521 tgtgtcaata gcatttaata atttgcttta cctcccagag cagatttctg ctttcagctt
     2581 atcttaagaa tggttgccaa gaacaactgt ctttccctga cctgaaaaat gttttattca
     2641 aatgtcaaaa taaattgtga atttcctatg gaatcaaagt aaatataaat accttattca
     2701 ttcttatttt agtggtgata gacaaacatt attaaatgca tcttagagat caaactttat
     2761 gaaaatgtat gattctatca agaatcataa ggaactgaat ggaaaatttc cagaaaggga
     2821 ttagtattat agactatttt gaagccgctt tcttaaaatc aaaatctggg ataggttctc
     2881 ttataaactt cattgcatat tgggagaaca gaataagaaa tgtgatattt ggatagggat
     2941 ttcagctaca gaccacagcc tcttgtgaga ggacctcttt attcttgaat gaataagagg
     3001 cgatgaaaac tttgcagcag gcatcagtga ggcttgttga aggatacagt gtgcagttag
     3061 accaatatca agaatatgat agagcttcca ttctctgtcc acatggcaag ccaaaaagtg
     3121 ataggctatg ttacaggttg aagcacagat atttgtaatc tactgaaaaa tagattcttt
     3181 ctgtaatttt ctcccttccc aattaacgag ccctaagcta catttttacc atatttggaa
     3241 ctttttcatt actaagaaag cttagtacag tggggaaatc ctttttttct tgtcctaagt
     3301 aatgtgtcta tctgaataaa cacaagtgat aatttcagct atagtagcat catttcttct
     3361 agctttaggt tggattggtg ttttcttaaa cagagttgtt agtcatgaac ccatccatgg
     3421 ttaccttaga gagatgatat acacacagag aaaccctaac attattcagc agggctagct
     3481 attcagattt cttgcacaag tatttagctt tttgtaaggt caacatgtaa attttaaaga
     3541 caaatataga gagacttatg tgtttgaaat ataaatgata tatatggata agcatgtacc
     3601 tgtatattat taaacatgca gtgaactgac tggtaagtga ttgtctaatt gtatggctag
     3661 caatgtaatt tattcagact gtatttttgt acagagcagc gcacactaac ctatgcctct
     3721 gtgtcctcct taatgcctaa aactgtgcct agaaatttca tctgtcttaa agaaaataaa
     3781 atatattcca tgctgtttta tgataatagt ttctttcctg ctattctgta tttattattt
     3841 ttaaatatct gacatgttta ctacttaaat atgagtttat gttatcctgt tcttttcttt
     3901 tcttttctct tcttttcttt tcttttcact tagaagtcat ctggggaaat ctgtttgtca
     3961 ctccagtgat gcttgagtgt gcagtcccat tatctgttct tcatttaatg atttttgtag
     4021 ttgacctaac gttatctatg tggaaaaaaa attaaaaaaa aaagtggttt cactaacaat
     4081 gc
//
