LOCUS       NM_001384248            4274 bp    mRNA    linear   ROD 31-OCT-2023
DEFINITION  Mus musculus transmembrane protein 44 (Tmem44), transcript variant
            8, mRNA.
ACCESSION   NM_001384248 XM_030249076
VERSION     NM_001384248.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4274)
  AUTHORS   Bedogni F and Hevner RF.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4274)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC104885.8.
            
            On Jun 12, 2020 this sequence version replaced XM_030249076.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927932.2169942.1,
                                           SRR7652917.455689.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-216               AC104885.8         97087-97302         c
            217-343             AC104885.8         94067-94193         c
            344-437             AC104885.8         91850-91943         c
            438-601             AC104885.8         90401-90564         c
            602-688             AC104885.8         90126-90212         c
            689-859             AC104885.8         87463-87633         c
            860-1009            AC104885.8         86113-86262         c
            1010-1114           AC104885.8         84178-84282         c
            1115-1273           AC104885.8         76136-76294         c
            1274-1306           AC104885.8         65024-65056         c
            1307-4274           AC104885.8         58579-61546         c
FEATURES             Location/Qualifiers
     source          1..4274
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 21.34 cM"
     gene            1..4274
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /note="transmembrane protein 44"
                     /db_xref="GeneID:224090"
                     /db_xref="MGI:MGI:1924489"
     exon            1..216
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..1414
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /note="isoform 5 is encoded by transcript variant 8"
                     /codon_start=1
                     /product="transmembrane protein 44 isoform 5"
                     /protein_id="NP_001371177.1"
                     /db_xref="GeneID:224090"
                     /db_xref="MGI:MGI:1924489"
                     /translation="MEEGASAAPPLLNWDYLERCFARRRVCISFGLWICAACCWIAAH
                     TLILYLRCTKKCSQDQSTLCAAFCLLTSLCDTVGAILARQLTIQVFTGAYLAAVDFMN
                     FMFTLFPVCGSKSKSKSGQSSRERRRRHLRASVFALALPLSLGPGWAIWTAIPKAPAP
                     VRGPQRRLLGSLLQENPEVFGYLLGAIAAFGSWASRIPPFSNICRGKSLSYIHLWTRF
                     LSALAGLLYASAIVAHDRQPEYLLQATPWFLISLGRAALDLAIIFLSCVIKSRMSRAF
                     RFATAEARESADTQALLTCAEKEEENQEARTEDKNSDWVPLTSLSHCKPLRTMTAISR
                     YMELTIEPAQQAGCSATRLPGDGQTSTRDAASQEPPSYPPIQVIQARVSSSSSSEVSS
                     INSDLEQKYWEALNSEQWDPEDVNLERKKDGELLRVQVRRASLSPVDLASDD"
     exon            217..343
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            344..437
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            438..601
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            602..688
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            689..859
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            860..1009
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1114
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1273
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1306
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..4274
                     /gene="Tmem44"
                     /gene_synonym="1700007N03Rik; 9330161C17Rik; B230220N21"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagccccac aataggcgag gctggggagc cgcgcggtcc gggaactttc cccggggtcg
       61 gcggaggctc ggccgtgcca tggaggaggg ggctagcgcc gcgcccccgc tcttgaactg
      121 ggactacctg gagcgctgct tcgcccgccg ccgcgtctgc atctccttcg gcctgtggat
      181 ctgcgccgcc tgctgctgga tcgctgccca cacgctgatt ctctacctga gatgcacaaa
      241 gaagtgtagc caagaccagt cgacactgtg cgctgcgttc tgcctcctaa cgagtctgtg
      301 tgacaccgtg ggggcgattc tggccaggca gctcacgatc caggtgttca ctggggccta
      361 cctagcagct gtcgatttca tgaacttcat gttcactctc tttcctgtct gtggatccaa
      421 atccaagtcc aagtccggtc agagcagcag ggagaggaga agaaggcatc tgagagccag
      481 tgtgttcgcc ctggctctgc ctctgagcct gggtccaggc tgggcaatct ggaccgctat
      541 ccccaaggct ccagccccag tccgtgggcc acaacggagg ctcctgggaa gccttctgca
      601 ggaaaacccg gaagtcttcg gctacctgct gggtgctatt gctgcctttg gctcctgggc
      661 atcccggatc cctccattct ccaatatctg tcggggcaag tcactctcct atatccacct
      721 gtggacccgg ttcctgtcag ctctggctgg tctcctctac gcctcggcca tcgtggctca
      781 tgaccggcag cctgaatacc tccttcaggc cacaccctgg ttcctgattt cactgggccg
      841 agctgcgctg gaccttgcta tcatctttct gtcctgcgtg ataaagagca ggatgagccg
      901 agccttcaga tttgctacag ctgaagccag agagagtgcc gacacacaag cccttttgac
      961 ctgtgcagag aaggaagaag aaaaccagga ggccaggacg gaggacaaga actcagactg
     1021 ggtgcctctg accagcctgt cacactgcaa gcccctgagg acaatgacag ccatcagtcg
     1081 ctacatggag ctgaccattg agcctgccca gcaggcaggc tgtagcgcca ccaggctgcc
     1141 cggtgacggg cagacaagca ccagagacgc cgcctcgcaa gagcctccct cataccctcc
     1201 catccaggtc atccaggcca gagtgtcttc cagcagctcc tccgaggtct cctccatcaa
     1261 ctcggacctg gagcagaagt attgggaagc cctaaactcg gagcagtggg accctgaaga
     1321 tgtcaacctt gaaaggaaaa aggacgggga actccttaga gtgcaggtgc gcagggcctc
     1381 tttgagcccc gtggatttgg cctctgatga ctaacatctt cgggagccaa gccatcagct
     1441 cggaactcaa agtcgggagt ctgtcagtga ctagatgggg accaacctat gaggccaccc
     1501 aggtcaggaa tggaagctgc tacagacact cctcagggag tgaggagccc tgacctgtca
     1561 cctagcatgg ctagtctaca ccatagctca aaatggagct ggggaccctg gggacagatc
     1621 tacacatgcc cagttcacag aagagcctgt ttgtaaagat gagctttctt ccaaatgaca
     1681 ggggatctag tcccacgcga ttcaaacata aatattgttt gcttaacaat gggatcgaac
     1741 tcaccaagag ctaccatttg gacctcagcg gaatgcattc ttcaagactc ccctaagccc
     1801 aggtggaaga gtgggtccac cagctcggag acctgggtag atgtacagga actggcttct
     1861 gccatccagt taacagatcg ttggcaggac aaaggcaact accgcctgct ctggagcagc
     1921 aggactccct ccaggctggc aaaatgtatg ctgaggctgg gtgacggggt ctcacgtgct
     1981 ttatcgggta gcagaaagcg tgctttgcat acggacacaa ctcgaagtgc acttccatcc
     2041 ttggacaggc gatttgagga tgattttaat aacgtgacca cgagtgaggg aatgagtaaa
     2101 gggaatgagg ccaggcagga gcgagcactg ggggtgaata aattttgacc gaatgagtta
     2161 aaaccgtctc acggtggaga acaggagtca gcctgaagcc cagcacagag ggctgccacg
     2221 aggggacctg ggaacaatgc caaggcatac aactctgccc gcagctggcc catgacccat
     2281 ctgtgactca gccgcagctg cccagtttct cctgagggca agtcccaaca gtgtgacgac
     2341 tggggtgcca gtggagattg gttggtcatg caggtttctg catggttcct aagcccttgg
     2401 gtgacctcta aactggaatt caaagccact ttatctgctc tgggctctcg gctctcttgt
     2461 gaggtggctt gcttaagtca gctctgctct gtcgtcttac ccactgaaac cactgtgagg
     2521 agtggaccat ggggggatgt ggtgaagtgg aacactccag cccggaacat tcaaatctag
     2581 aggcagggaa gggtggagat ctagtcaagg aaggagaaac ctgacgtggc cggcatgact
     2641 ggtgtgacat ggttttgtaa ggagagagct ggaaaagagc gggctgtgga ggttaggggg
     2701 ctagtgctga gccctgtagc caggcaggac accaaagcag gaaggtgacc gacttgctca
     2761 cgcagactac aattagtgag ttcctcaccc ctgacttttc aagaagcaga aatgtggtca
     2821 agggtacaga gtaaacatga gacacgtgct tcaagtacgt tccttaaaca aacaaacaaa
     2881 caaaaccagg gactgtaaga ggccaagata acctcaaaat catggccttc ctacctggca
     2941 gcattgcaag tgctgggatt gcaggcccca gcagccgtgc ccagtctttc actttacaga
     3001 tgaggacaca cgtttaaata cagtatccaa agtatcagcc tcacaagtag aagtggccat
     3061 aatccatgat aatgaaggcc ctgcttaaac tcctggagtc tgaggtatgt tacctgccag
     3121 agacgtctgg gtgatttaag gagagctctt gttactaagt tgtcttaaaa gtttgcctgg
     3181 agggctgcgg cttagctggg cgaatgcttt cctaacacgt gcaaggccct ggcttgcagt
     3241 gcagcataag gggtaggatg atagacaccc ggagtctggg aagtggaggc agcaggatta
     3301 gaagttcaag gtcatctatc tttagctctg tagcaaaggt tggcatgaga tatatgagac
     3361 cctggaggtg gggggagaga acaactgtgc agaccttgaa gaactaatcc ccttaaatcc
     3421 atccagtcac tccaggaaga ggtcatgagg accatctgat gatctatgca ctgctgttac
     3481 actgagaaat gagttactag tttgggaagc tctgggtgga ggaaggggcg tggctggtct
     3541 cctgtgccgg gcctgaataa gtgtgccgcc ctttccctgc tgagtcatgg ttttccctgt
     3601 ctttaacaag aaaggccaag cctagtggct cacacttttt gggaagctgg gacaggaggg
     3661 cttccacaag ttaaaggtca gcctggctac taagacccag tctcaaaaga cccacaaacc
     3721 aggctgggtg tggtggctca ttcctttaat accagtatct gggagagaga gaggcagaag
     3781 gatctctgag ttcaaggcca gcctggtgta cagagttcca ggtgagttcc aggacagcca
     3841 gggcaacata gtgagaccct gtctcaaaca aaacaaaaaa caaccaccac tgagctgggg
     3901 atataactac aggtcgatgg tagagcactt ccctaacatg caggagccct tgggttccat
     3961 ccccatcgtg aaaatagact tccttttttc tctcataact atgccagtca gcagttcaca
     4021 cgtaagacta acatctctac acacatccag aaagacacgc tacatgaagg taaatttcat
     4081 atacaccttg aaaatctgtt tcaatttatt tacttattat tattttttaa ttaattggtt
     4141 ggttggttct cctgagcctg ggtttctctg tgtagccctg actgtcctgg aacttgttct
     4201 atatggcctc gagtactgag gtccgcctgc ctctgcctcc caagcgtcct tggattaaag
     4261 gcgttcgcca ccaa
//
