LOCUS       NM_025693               1359 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 41a (Tmem41a), transcript
            variant 1, mRNA.
ACCESSION   NM_025693
VERSION     NM_025693.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1359)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1359)
  AUTHORS   Lin,B., Xue,Y., Qi,C., Chen,X. and Mao,W.
  TITLE     Expression of transmembrane protein 41A is associated with
            metastasis via the modulation of E-cadherin in radically resected
            gastric cancer
  JOURNAL   Mol Med Rep 18 (3), 2963-2972 (2018)
   PUBMED   30015937
  REMARK    GeneRIF: The present study demonstrated a reduction in TMEM41A
            expression levels in a pair of GC cell lines, and revealed that
            high TMEM41A expression levels may promote GC-associated
            metastasis, which may be mediated by the downregulation of
            E-cadherin expression.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB873279.1, AK007685.1 and AK013518.1.
            
            On Feb 3, 2011 this sequence version replaced NM_025693.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes a functional protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK007685.1, BC011512.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                BB873279.1         3-54
            53-1143             AK007685.1         48-1138
            1144-1359           AK013518.1         969-1184
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 12.94 cM"
     gene            1..1359
                     /gene="Tmem41a"
                     /gene_synonym="2900010K02Rik; 5730578N08Rik"
                     /note="transmembrane protein 41a"
                     /db_xref="GeneID:66664"
                     /db_xref="MGI:MGI:1913914"
     exon            1..185
                     /gene="Tmem41a"
                     /gene_synonym="2900010K02Rik; 5730578N08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            186..339
                     /gene="Tmem41a"
                     /gene_synonym="2900010K02Rik; 5730578N08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            340..501
                     /gene="Tmem41a"
                     /gene_synonym="2900010K02Rik; 5730578N08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            502..640
                     /gene="Tmem41a"
                     /gene_synonym="2900010K02Rik; 5730578N08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            641..1359
                     /gene="Tmem41a"
                     /gene_synonym="2900010K02Rik; 5730578N08Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtcggcgc acggggaggg ctctgcgttg ccacgggggg agcgcgctct ccggccaggc
       61 cgcggcatgc gcgcgctgct cggcttgctc ctcgtattcg gaggctgcac cttcgcatta
      121 tacctgctct ccacgcggct gcccttgggg ccgaggctgg cggcggccgg ggagcccgaa
      181 ggccggtcgc tgtggttccc ctccgatctg gcagagctgc gggagctctc tgaagttctt
      241 cgagagtacc ggaaagagca ccaggcctat gtgttcctgc tcttttgcag tgcctacctc
      301 tacaagcagg gctttgccat ccctggctcc agcttcctga atgttttggc tggtgccttg
      361 ttcgggccat ggctgggact tttgctgtgc tgcgtgttga catccgtggg tgccacaggc
      421 tgctacctgc tttccagtct tttcggcaaa cagctggtca tctcctactt tcctgataaa
      481 gtggccctgc tgcagaagaa ggtggaggag aaccgaaaca gcctgttctt tttcctgctg
      541 ttcctcagac tcttccccat gacaccaaac tggttcttga acctctcggc cccgattctg
      601 aacatcccca ttgtgcagtt tttcttctca gtgctcatcg gtttgatccc ttacaatttc
      661 atctgcgtgc agacgggctc catcctctcc accctcacct ctctggatgc cctcttctct
      721 tgggagactg tcttgaagct cttggccatc gccctggtcg ctttggttcc gggaacgctc
      781 atcaaaaaat ttagccagaa gcgcctggcg ctgagtgaaa caagcgacat cggccaccca
      841 gaccgcagga aggacgcatg atgtgggttc tgtgtttaca gggcccggac tgtgctgctg
      901 gtccctttaa tgtcctcatt gtgttttaat taccctcaaa ggatgagatg gacagtgctc
      961 tagtgtgtgc agaggtctgt tagaagggcg ttttgtcctg ttcagcaggt tctatgaaat
     1021 ggaccacttt ctagaaatcc tatccagtta tctgtcgggc ttgcctcttg ctggaccctg
     1081 agatgtcttg gaagatgatg ctggtggcct ttttggacaa gctgtgtgtc ctctgtgact
     1141 ctgttgaaga gtgtcctctc tacctttctg ctgctgatct acctctccat aagccaaggg
     1201 aaacatgacg ggctgcgtag gtcttacacg cagcatttaa gtgcagggat tcctgcattt
     1261 cccctgttca cagatacttc tatccatgtt gaagctcctt gtagttatat gtcttgatag
     1321 ttaggctgat tcaaacatga ttaaagatga acggaagcc
//
