LOCUS       NM_199305               1834 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus transmembrane protein 39b (Tmem39b), transcript
            variant 1, mRNA.
ACCESSION   NM_199305 XM_131697
VERSION     NM_199305.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   2  (bases 1 to 1834)
  AUTHORS   Taniwaki,T., Haruna,K., Nakamura,H., Sekimoto,T., Oike,Y.,
            Imaizumi,T., Saito,F., Muta,M., Soejima,Y., Utoh,A., Nakagata,N.,
            Araki,M., Yamamura,K. and Araki,K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   3  (bases 1 to 1834)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   4  (bases 1 to 1834)
  AUTHORS   Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J.,
            Akizuki,M., Miura,K., Araki,M. and Yamamura,K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CV561000.1, DV656907.1, CB248417.1, BM122099.2, AL671759.10 and
            BF465506.1.
            
            On Oct 4, 2017 this sequence version replaced NM_199305.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049790.1, BU695980.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-668               CV561000.1         1-668
            669-1203            DV656907.1         177-711
            1204-1608           CB248417.1         207-611
            1609-1815           BM122099.2         1-207               c
            1816-1818           AL671759.10        106331-106333       c
            1819-1834           BF465506.1         1-16                c
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 63.31 cM"
     gene            1..1834
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /note="transmembrane protein 39b"
                     /db_xref="GeneID:230770"
                     /db_xref="MGI:MGI:2682939"
     exon            1..131
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            132..258
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            259..478
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            479..562
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            563..717
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            718..1054
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1242
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1243..1363
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1820
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1788..1793
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      1817
                     /gene="Tmem39b"
                     /gene_synonym="6330509E05Rik"
                     /note="major polyA site"
ORIGIN      
        1 gccggaggga gcgtgcggct gatacccggc ccgggctgcg gcggttagtc ctctctcggc
       61 cgccgtcgcc tccgacatat tgcccgcagg agctgcggcg gtgagcggag agcgccgggg
      121 gaaggagatg ggaggacgaa gaggtcccaa caggacatct tactatcgaa acccgctctg
      181 tgagccagga tcatcagggg cctctggtgg aggccactct tctagtgcat ccgtgagcag
      241 cgtccgttct cgaagcagga ccacttctgg gacgggcctc tccagccctc cgctggccgc
      301 gcagaccgtt gtgcctctac agcactgcaa gatccccgag ctgcccgtcc aggccagcat
      361 tctgttcgag ctccagctct tcttctgtca gctcatagcc ctgttcgtgc actacatcaa
      421 catctataag acagtctggt ggtatccacc ctcgcaccca ccctcccaca cttccctgaa
      481 cttccacctg atcgacttca acttgctgat ggtgaccgcc attgttctgg gccgccgatt
      541 catcgggtcc atcgtgaagg aggcttctca gagggggaag gtctccctct tccgctccat
      601 cctgctgttc ctcacccgct tcaccgttct cacggcgaca ggctggagtc tgtgccggtc
      661 cctcatccac ctcttcagga cctactcctt cctgaacctc ctgttcctct gctatccgtt
      721 tgggatgtac attccgttcc tgcagctgaa ctatgatctt cgcaagacga acctcttcac
      781 ccacatggct tccatgggac cccgagaggc agtcagtggc ctggcaagga gtcgggacta
      841 ctttctgaca ctgcgggaga cttggaagca gcatacacga cagctatatg gcccggaagc
      901 catgcccacc catgcctgct gcttgtcacc cagcctcatt cgcaatgaag ttgagttcct
      961 caaaatggac ttcaattggc gaatgaagga agtacttgtc agctccatgc tgagtgccta
     1021 ctatgtggcc tttgtacctg tgtggtttgt gaagaataca cattactatg acaagcgctg
     1081 gtcctgtgag ctcttcctgc tggtgtccat cagtacctcc gtgatcctca tgcagcactt
     1141 gttgcctgcc agctactgtg acctgctgca caaggccgcc gcccacctgg gctgctggca
     1201 gaaggtggac ccagctctgt gctccaatgt gctgcagcac ccgtggactg aagagtgcat
     1261 gtggccacag ggtgtgctgg tgaaacacag caagaatgtc tacaaagcag tgggccacta
     1321 caacgtggcc atcccctccg atgtctccca cttccgcttc catttctttt tcagcaaccc
     1381 cctgcggatc ctcaacatcc ttttgctgct ggagggtgcc gtcattgtct accagctgta
     1441 ctccttaatg tcctcagaga agtggcacca gaccatctcc ctggccctca tcctcttcag
     1501 caactactat gccttcttca agctgctccg ggaccgcctg gtattgggca aagcctactc
     1561 ctactcagcc agcccccaga gggacctgga ccaccggttc tcctgagtcc cagggtgatc
     1621 ctccaaacaa catccgggct tcacccaggg gcttcctggc caagggctct tggggttggg
     1681 ggggagggat acaaaaaaca aaaacaaaaa acaacaaaaa aaaaccaacc caccagagct
     1741 ttgtattttt gttacgtact gtttctttct ttgataattg atgtggtaag aaaaaagtct
     1801 tatttttata ctctgaacaa aaaaaaaaaa aaaa
//
