LOCUS       NM_026407               2869 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 39a (Tmem39a), transcript
            variant 1, mRNA.
ACCESSION   NM_026407
VERSION     NM_026407.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY072316.1, AK017817.1 and AK133638.1.
            
            On Apr 9, 2011 this sequence version replaced NM_026407.2.
            
            Transcript Variant: This variant (1) and variant 2 encode the same
            isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133638.1, BC020318.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-270               BY072316.1         3-272
            271-2007            AK017817.1         229-1965
            2008-2869           AK133638.1         1980-2841
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 26.87 cM"
     gene            1..2869
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /note="transmembrane protein 39a"
                     /db_xref="GeneID:67846"
                     /db_xref="MGI:MGI:1915096"
     exon            1..317
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            318..504
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             392..1852
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="transmembrane protein 39A isoform 1"
                     /protein_id="NP_080683.2"
                     /db_xref="CCDS:CCDS28171.1"
                     /db_xref="GeneID:67846"
                     /db_xref="MGI:MGI:1915096"
                     /translation="MPSRRRGPSRQQLSRSALPSIQTLVGGGCGNGTGLRNRNGNAIG
                     LPVPPTTALITPGPVRHCQIPDLPVDGSLFFEFLFFIYLLIVLFIQYINIYKTVWWYP
                     YNHPASCTSLNFHLIDYYLAAFITVMLARRLVWALISEATKAGAASTVHYTALILARL
                     VLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPFGVYVPLYCFHQDSRAHLLLTDYVVQ
                     HQAVEEAASNVGSLARSKDFLSLLLESLKEQFNNATPIPTHSCPLSPDLIRNEVECLK
                     ADFNHRIKEVLFNSLFSAYYVAFLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQ
                     LLPSKYCDLLHKSAAHLGKWQKLEHGFYSNAPQHIWSENTIWPQGVLVRHSRCLYRAM
                     GPYNVAVPSDVSHARFYFLFHRPLRVLNLLILIEGSVVFYQLYSLLRSEKWNHTLSMA
                     LILFCNYYVLFKLLRDRIVLGRAYSYPLNSYELKAN"
     exon            505..727
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            728..811
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            812..966
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1309
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1497
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..1618
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1619..2869
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1991..1996
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2011
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /note="major polyA site"
     regulatory      2073..2078
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /note="hexamer: AGTAAA"
     polyA_site      2091
                     /gene="Tmem39a"
                     /gene_synonym="2610033C09Rik"
                     /note="major polyA site"
ORIGIN      
        1 agagctgacg tcatcgctgt gcgctgccac gtctcctcag ctcccgggcg atggaggctg
       61 aggatgatga gtcttggtga tggggtcgga ctgtgcttct gactttagct ctggctctgg
      121 cacggactcc cggtctgggt ctggtaacct agcgacccga gagctttctt cgactgtcca
      181 gtgggatcct gcctgcgtcc cggcagctgt ttttggagcg ctttagagga gggagtgagt
      241 ttgggtgccc ggggtcgcgg ctgtgaagcc gccgcctcct cccagggatc cctctccgtg
      301 gccagcctgt cccatgcatt tgaaataagt tgacagtcat cagcctgggt ggcaacttca
      361 ggtggcactg gaaattacct ggttcctgga catgcccagt agaaggcggg gtcccagtcg
      421 gcagcagcta agccggtcag ctttaccttc catacagacg ttggtcggcg gcggctgtgg
      481 caatgggacg ggcttgagga acaggaatgg taatgctatt ggccttccag tcccacccac
      541 cacagcctta attaccccag gtcctgttcg tcattgccaa atccctgact taccagtaga
      601 tgggagcctg ttctttgaat ttcttttctt catctacctg ctgattgttc tgttcattca
      661 gtatatcaac atctataaga cggtgtggtg gtatccgtac aatcatcctg cttcttgtac
      721 ttcactgaat tttcacctca ttgattatta cctggcagca ttcatcacag tgatgcttgc
      781 gaggaggctt gtatgggccc tcatttccga ggctactaaa gcaggtgctg cgtctacggt
      841 tcactacaca gctctgatcc tggcccgctt ggtgctcctt actctgtgtg gatgggtgct
      901 ctgctggacc ctggtcaatc ttttccgaag ccattcagtc ctcaatctcc tgttccttgg
      961 ctatccgttt ggtgtttatg ttcctctcta ctgtttccac caagatagca gagcccatct
     1021 tcttctcaca gactatgtgg ttcagcacca ggcagtagag gaggcggctt caaatgtggg
     1081 cagtttggcc agatccaaag atttcctctc cttactgctg gagtctctaa aagaacagtt
     1141 taataatgcc acgcccatcc ccacccacag ctgcccccta tctcctgatc tcattcgcaa
     1201 tgaagtagaa tgtctgaaag cagatttcaa ccacagaatc aaggaagttc tcttcaactc
     1261 cctcttcagt gcctactacg ttgcatttct cccgctgtgt tttgtgaaga gtacccagta
     1321 ttacgacatg cgctggtcgt gtgagcacct cattatggtg tggatcaatg cttttgtcat
     1381 gctcaccacg caactgctgc catccaaata ctgtgacttg ctacacaaat cagctgctca
     1441 cctgggcaag tggcagaagt tggagcatgg gttctacagc aatgctccac agcacatttg
     1501 gtcagaaaac acaatatggc ctcaaggggt gttggtgcgg cacagcagat gtttatatcg
     1561 agccatggga ccttacaatg tagcagtgcc ttcagatgta tcccatgccc gcttttattt
     1621 cctgtttcac cgcccattac gagtgctgaa cctgcttatc ctcattgaag gcagtgttgt
     1681 cttctaccag ctgtattcct tgctgcggtc ggagaagtgg aaccacacgc tctccatggc
     1741 cctcatcctt ttctgcaact actatgtttt atttaagctc ctccgggaca gaatagtctt
     1801 aggcagggca tactcctacc ccctcaacag ttacgaactc aaggccaact aagctgtctc
     1861 tcaacaggag ggagaattca gataaaaata ttttcatacg atctattttt tcttgcgatt
     1921 tttataaata tttaagatat tttatatttt gtatactatt atgttttgaa agttgggaag
     1981 ggtaagggat attaaatgta tccataaaca agatgatgtt atctttcatg tgttagtata
     2041 cttgaatatt atacatgaga ggttgcccct tcagtaaaag attgacttgt ttgtctggct
     2101 ctggagtgac attcacttag gaactatcgc ctgactgggg tctttggtgt gtctgtttcc
     2161 tttttagtcg tgtttttgtt atctttagtt cctctcctgg ccataattat tgctttagaa
     2221 aagcaactcc gacagatgga tggagttgcc ttccctggct gacaatactg ggatggctac
     2281 agcagaggga gttccagtct tgggtccggt gctcttttca cccactggga ggaggtcctt
     2341 ctaaactggt gtgtctgctg agctgctctt gtactttcca gtgacttctc ctggtggtct
     2401 cggctttgct gtcactttgc ctgatctttc atggctttca cttgcaaagg ttttcctttt
     2461 actcttagtt acatgcagta atgcttttca aagacaggaa gtgcttggga tgcccacact
     2521 caggaaggat ccaagggagg agctgagtgt aaatgccatg tggatcacta gagtgtgggg
     2581 acatggaaac tgtcagcaaa atagcctgag ggtgctccgg ctgccacctc tctacagtgg
     2641 cgtggttgga gtgacgaggg agcgaaaata caagaaggtg ctgctctgtc tcagaatttg
     2701 atctataccc aaaatttgtg ttttaaattc atgctcaaag gctgataata agtacatatt
     2761 aataagtaca tgttaataag tatatattaa tgtacttgtt tcatatgcac gaggtctgat
     2821 ttgttcccca acagtgcaga agataagtaa ataaacgtct tgtgtcagc
//
