LOCUS       NM_027457                971 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus transmembrane protein 242 (Tmem242), mRNA.
ACCESSION   NM_027457
VERSION     NM_027457.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY013779.1, AK043276.1, AW555272.2 and BB817862.1.
            
            On Apr 28, 2007 this sequence version replaced NM_027457.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK009851.1, AK155326.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849382, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                BY013779.1         2-33
            33-552              AK043276.1         1-520
            553-746             AW555272.2         218-411             c
            747-971             BB817862.1         188-412
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 3.16 cM"
     gene            1..971
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /note="transmembrane protein 242"
                     /db_xref="GeneID:70544"
                     /db_xref="MGI:MGI:1917794"
     exon            1..128
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..466
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /note="UPF0463 transmembrane protein C6orf35 homolog"
                     /codon_start=1
                     /product="transmembrane protein 242"
                     /protein_id="NP_081733.3"
                     /db_xref="CCDS:CCDS49930.1"
                     /db_xref="GeneID:70544"
                     /db_xref="MGI:MGI:1917794"
                     /translation="METSGPGPGESSELEAPGSPDDRLFLVKGGIFLGSAAAAGMLAG
                     FVTTLSLAKKKSPEWFNKGTMATAALPESGSSLALRALGWGSLYAWCGVGVISFAVWK
                     ALGVHSMKDFRSKMQSIFPPIPKNHESAEEWEEVLKWK"
     exon            129..229
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            230..367
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            368..971
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      948..953
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      966
                     /gene="Tmem242"
                     /gene_synonym="1110008A10Rik; 2310046K16Rik;
                     5730437N04Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggcctcttt ggtaacggaa acagtagagt aggagacttt aaaatggaga cctcgggtcc
       61 tgggcccggg gagtcctctg aattagaagc tccagggtct ccggacgatc ggttgtttct
      121 ggttaaaggt ggaattttcc ttggttctgc agccgcagcg ggaatgctag ctggatttgt
      181 tacaacatta tcattagcta aaaagaaaag ccctgagtgg ttcaataagg gcactatggc
      241 cacggctgcc ttaccagaga gtgggtcttc ccttgccctg cgagccctgg gctggggttc
      301 tctttatgcc tggtgtggag ttggtgtgat cagctttgca gtgtggaaag ccttaggagt
      361 tcacagcatg aaggactttc gaagtaagat gcaatccata ttcccaccaa ttcccaagaa
      421 ccatgagtca gccgaggagt gggaggaagt cctgaagtgg aaatgacaca gcacgggcga
      481 ctccggagca acggctgcag gaatggcagc tttggaaaca ccatgtctga gaaagactgg
      541 ggcgactcct ctctaggaac acgtgccgat ggccggcaaa cccagaggcc acagcatcgc
      601 cgtggctgtg gctgtggcac acggtcggaa tgttttccta aagctaagac aacaattgaa
      661 ttacctagaa gttctcagaa gggacctgga ggaaatgttg ttgtttagaa caataaacca
      721 tgtttcatag tcacaaaagt cggggggggg gggggggctg gagagattcc ccatggctaa
      781 gatctcacac tgctctcgag aggacctcag ttcgttttcc agccccgtcc ctcttttggg
      841 tgcctcacca ccatctgtgc catcaggctc caggggaatc tgaagtcttg cctggaatat
      901 gtgcgcacct gccctcacgt gtatctacag ccacaaaagt atatacaatt aaaaactgag
      961 aagtcagcgg g
//
